miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 152193 0.68 0.944848
Target:  5'- gUUGUuGCGCGAguaGuuGGUGAUGCGc- -3'
miRNA:   3'- -AGCAuUGCGCUg--CggCCACUGCGUug -5'
15931 3' -54.6 NC_004065.1 + 151425 0.67 0.963795
Target:  5'- gCGgcGCGaCGACGUCGcGUucGACgGCGACg -3'
miRNA:   3'- aGCauUGC-GCUGCGGC-CA--CUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 151356 0.67 0.963795
Target:  5'- cUCGggcgcCGCGGCGCCGGccgcuGCGCuGGCg -3'
miRNA:   3'- -AGCauu--GCGCUGCGGCCac---UGCG-UUG- -5'
15931 3' -54.6 NC_004065.1 + 150788 0.72 0.797174
Target:  5'- cCGUcAGCGUGAucCGCUGGUG-CGCGAUg -3'
miRNA:   3'- aGCA-UUGCGCU--GCGGCCACuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 147894 0.68 0.943976
Target:  5'- gCGUc-CGCGcCGCCGGauacgucagccgGGCGCAGCu -3'
miRNA:   3'- aGCAuuGCGCuGCGGCCa-----------CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 145763 0.67 0.963795
Target:  5'- aUCGcguCGCG-CGCCGGUcgcgGGCGCucGCa -3'
miRNA:   3'- -AGCauuGCGCuGCGGCCA----CUGCGu-UG- -5'
15931 3' -54.6 NC_004065.1 + 143138 0.69 0.902937
Target:  5'- cCGgcGcCGCGaccuGCGUCGGUGAUGaCGACg -3'
miRNA:   3'- aGCauU-GCGC----UGCGGCCACUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 143099 0.69 0.93083
Target:  5'- aCGUGGgguccaucuuCGCGGCGCCGGgaaagGuCGuCGACa -3'
miRNA:   3'- aGCAUU----------GCGCUGCGGCCa----CuGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 141148 0.7 0.87663
Target:  5'- gCGU--UGCGGCGUCGGUcacuucGACGUGACg -3'
miRNA:   3'- aGCAuuGCGCUGCGGCCA------CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 139702 0.67 0.960433
Target:  5'- uUCGcgGACGCGcuUGCCGGaugaggGACGUGGCc -3'
miRNA:   3'- -AGCa-UUGCGCu-GCGGCCa-----CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 137915 0.66 0.977643
Target:  5'- cCGUcAAUGCcgucugacGCGCCGGgcucggagcugcUGGCGCAACg -3'
miRNA:   3'- aGCA-UUGCGc-------UGCGGCC------------ACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 136608 0.68 0.953075
Target:  5'- -gGUGggguGCGgGGCGCUGGUccGAgGCGGCg -3'
miRNA:   3'- agCAU----UGCgCUGCGGCCA--CUgCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 135664 0.71 0.847012
Target:  5'- cCGUAACGCG-CGUCGGgggGcucGCGCAGa -3'
miRNA:   3'- aGCAUUGCGCuGCGGCCa--C---UGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 135538 0.67 0.966953
Target:  5'- cCGUcGACGuCGACGUCGGacgGGCGgaCGACg -3'
miRNA:   3'- aGCA-UUGC-GCUGCGGCCa--CUGC--GUUG- -5'
15931 3' -54.6 NC_004065.1 + 135366 0.69 0.918147
Target:  5'- ---aGACGCGGCGaguucuucagggaCGGUGACGCGc- -3'
miRNA:   3'- agcaUUGCGCUGCg------------GCCACUGCGUug -5'
15931 3' -54.6 NC_004065.1 + 135131 0.66 0.977643
Target:  5'- cCGggcgGGCGCGGCG--GGUGAUGaCGACg -3'
miRNA:   3'- aGCa---UUGCGCUGCggCCACUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 133731 0.71 0.839129
Target:  5'- gUCGUGugGaCGGCGUCcGUGACGCc-- -3'
miRNA:   3'- -AGCAUugC-GCUGCGGcCACUGCGuug -5'
15931 3' -54.6 NC_004065.1 + 133335 0.67 0.960433
Target:  5'- cCGUccugAACcugGCGGuguuguucuUGCCGGUGACGCGAa -3'
miRNA:   3'- aGCA----UUG---CGCU---------GCGGCCACUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 133038 0.73 0.761017
Target:  5'- aCGUcgcagcAGCGCGACGgaCGGccGGCGCAGCa -3'
miRNA:   3'- aGCA------UUGCGCUGCg-GCCa-CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 123672 0.69 0.93083
Target:  5'- aCGUGGCGCGcUGCCcGUG-CaGCAGCg -3'
miRNA:   3'- aGCAUUGCGCuGCGGcCACuG-CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.