Results 61 - 80 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 122931 | 0.67 | 0.955372 |
Target: 5'- cCG-AACcCGACGCCGGcguuccagacgagGAUGCAGCu -3' miRNA: 3'- aGCaUUGcGCUGCGGCCa------------CUGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 121444 | 0.67 | 0.966953 |
Target: 5'- gCGUGcgguuggaGCGGauggUGCCGGUGucgGCGCAGCg -3' miRNA: 3'- aGCAUug------CGCU----GCGGCCAC---UGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 121084 | 0.66 | 0.975249 |
Target: 5'- gUCGUcGGCGUacUGCCGcaGGCGCAGCg -3' miRNA: 3'- -AGCA-UUGCGcuGCGGCcaCUGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 120150 | 0.71 | 0.847012 |
Target: 5'- gCGgccGCgGCGACGCCGGUGGCaccgccCGGCa -3' miRNA: 3'- aGCau-UG-CGCUGCGGCCACUGc-----GUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 120104 | 0.7 | 0.890214 |
Target: 5'- cCGgGACGCGACGgCGGc--CGCGGCg -3' miRNA: 3'- aGCaUUGCGCUGCgGCCacuGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 117398 | 0.69 | 0.925705 |
Target: 5'- cUCGgccGCGCG-CGCUGGgcuCGCGGCg -3' miRNA: 3'- -AGCau-UGCGCuGCGGCCacuGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 116786 | 0.66 | 0.979431 |
Target: 5'- uUCGguuGCGCGGCcacguacguguugGCCGGUaccgaccGGgGCAGCg -3' miRNA: 3'- -AGCau-UGCGCUG-------------CGGCCA-------CUgCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 114863 | 0.69 | 0.914772 |
Target: 5'- gUCGggGCGCGGCGCCc--GACGaCGAUg -3' miRNA: 3'- -AGCauUGCGCUGCGGccaCUGC-GUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 113933 | 0.68 | 0.940401 |
Target: 5'- gUCGacGACGCGGCGCuCGGgggcuggGACGgaGACg -3' miRNA: 3'- -AGCa-UUGCGCUGCG-GCCa------CUGCg-UUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 110697 | 0.66 | 0.983801 |
Target: 5'- gUGUGACGUGA-GCCGccGcCGCGACu -3' miRNA: 3'- aGCAUUGCGCUgCGGCcaCuGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 109246 | 0.73 | 0.742253 |
Target: 5'- gCGgua-GCGGCGUCGGUGACGaUGACg -3' miRNA: 3'- aGCauugCGCUGCGGCCACUGC-GUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 106563 | 0.67 | 0.966953 |
Target: 5'- cUCGcAGCGCGGguCGCUGGgcGACGUGAUc -3' miRNA: 3'- -AGCaUUGCGCU--GCGGCCa-CUGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 105658 | 0.66 | 0.979861 |
Target: 5'- uUCGcGGCG-GAUGCCgcGGUGACGauCGACa -3' miRNA: 3'- -AGCaUUGCgCUGCGG--CCACUGC--GUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 105215 | 0.66 | 0.975249 |
Target: 5'- uUCGUgGACGCccggcgGACGUCGGacgaggagauggUGGCGCAGa -3' miRNA: 3'- -AGCA-UUGCG------CUGCGGCC------------ACUGCGUUg -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 105169 | 0.66 | 0.979861 |
Target: 5'- cUCG-GACGUGGCGCgGaUGAuCGCGAUg -3' miRNA: 3'- -AGCaUUGCGCUGCGgCcACU-GCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 105128 | 0.66 | 0.983801 |
Target: 5'- cCGcugGACGCGGCGCacaucgaGGa-GCGCAACc -3' miRNA: 3'- aGCa--UUGCGCUGCGg------CCacUGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 104789 | 0.67 | 0.956861 |
Target: 5'- cUCGaGACGgGcaucgaGCUGGUGACGCGcuGCg -3' miRNA: 3'- -AGCaUUGCgCug----CGGCCACUGCGU--UG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 103723 | 0.67 | 0.960433 |
Target: 5'- cUCGggacGACGCGccuccuucgGCGUCGGUucGCGCGGCg -3' miRNA: 3'- -AGCa---UUGCGC---------UGCGGCCAc-UGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 103530 | 0.72 | 0.814436 |
Target: 5'- gCGcAugGCGACGCgGGUGcagcGCGcCAACa -3' miRNA: 3'- aGCaUugCGCUGCGgCCAC----UGC-GUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 102268 | 0.66 | 0.981912 |
Target: 5'- gCGUuacaGGCGCagaaGACGUCGGUcaGGCGCAc- -3' miRNA: 3'- aGCA----UUGCG----CUGCGGCCA--CUGCGUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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