miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 168555 0.7 0.87663
Target:  5'- -gGUGGCaGCGGCGgCGGcGGCGaCAGCg -3'
miRNA:   3'- agCAUUG-CGCUGCgGCCaCUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 71743 0.71 0.846232
Target:  5'- -gGUGACGCGGCGCuaccgguCGGUGAcCGUguuGGCg -3'
miRNA:   3'- agCAUUGCGCUGCG-------GCCACU-GCG---UUG- -5'
15931 3' -54.6 NC_004065.1 + 135664 0.71 0.847012
Target:  5'- cCGUAACGCG-CGUCGGgggGcucGCGCAGa -3'
miRNA:   3'- aGCAUUGCGCuGCGGCCa--C---UGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 176179 0.71 0.854709
Target:  5'- aCG-AugGCGACGgCGGcgGAgGCAGCu -3'
miRNA:   3'- aGCaUugCGCUGCgGCCa-CUgCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 44514 0.71 0.862215
Target:  5'- uUCGUccggcGGCGCGAUGuuaCCGGggacgGugGCGGCg -3'
miRNA:   3'- -AGCA-----UUGCGCUGC---GGCCa----CugCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 68227 0.71 0.862215
Target:  5'- gCGggugAGCGCGuCGgCGGUGACGagGACg -3'
miRNA:   3'- aGCa---UUGCGCuGCgGCCACUGCg-UUG- -5'
15931 3' -54.6 NC_004065.1 + 77366 0.71 0.862215
Target:  5'- aCGcAGCGCGACGagcacCCGGUGAUGguGg -3'
miRNA:   3'- aGCaUUGCGCUGC-----GGCCACUGCguUg -5'
15931 3' -54.6 NC_004065.1 + 159890 0.7 0.869524
Target:  5'- gUCGUAACGUuaguucguuCGUCGGUGGCGaGACg -3'
miRNA:   3'- -AGCAUUGCGcu-------GCGGCCACUGCgUUG- -5'
15931 3' -54.6 NC_004065.1 + 141148 0.7 0.87663
Target:  5'- gCGU--UGCGGCGUCGGUcacuucGACGUGACg -3'
miRNA:   3'- aGCAuuGCGCUGCGGCCA------CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 87207 0.71 0.831068
Target:  5'- gUCGUugauguACGCauacGACGCCGGUgagaacGACGCGAg -3'
miRNA:   3'- -AGCAu-----UGCG----CUGCGGCCA------CUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 48743 0.71 0.831068
Target:  5'- gUCGUAGCaGUaGAugcCGCCGGUGGCGCc-- -3'
miRNA:   3'- -AGCAUUG-CG-CU---GCGGCCACUGCGuug -5'
15931 3' -54.6 NC_004065.1 + 40310 0.71 0.822834
Target:  5'- aCGUGuuUGCGAUGCCGGUGuCGUcguggaggGACa -3'
miRNA:   3'- aGCAUu-GCGCUGCGGCCACuGCG--------UUG- -5'
15931 3' -54.6 NC_004065.1 + 48101 0.75 0.654268
Target:  5'- --cUGugGCGGCGgCGGUGGCgGCGGCg -3'
miRNA:   3'- agcAUugCGCUGCgGCCACUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 166135 0.74 0.703696
Target:  5'- gUCGgcagaGACGuCGGCGCCGGcGGCaGCGGCg -3'
miRNA:   3'- -AGCa----UUGC-GCUGCGGCCaCUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 109246 0.73 0.742253
Target:  5'- gCGgua-GCGGCGUCGGUGACGaUGACg -3'
miRNA:   3'- aGCauugCGCUGCGGCCACUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 65823 0.73 0.751685
Target:  5'- aUCGUGAaCGCGAUGCCGGcgGAgaucCGCGcGCa -3'
miRNA:   3'- -AGCAUU-GCGCUGCGGCCa-CU----GCGU-UG- -5'
15931 3' -54.6 NC_004065.1 + 211548 0.73 0.761017
Target:  5'- aCG-AAUGCGGCGaCGGUGAuCGCGAUg -3'
miRNA:   3'- aGCaUUGCGCUGCgGCCACU-GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 38145 0.72 0.779346
Target:  5'- gCGUGcgcAUGCuGACGCUGGaaGACGCGGCg -3'
miRNA:   3'- aGCAU---UGCG-CUGCGGCCa-CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 200780 0.72 0.788327
Target:  5'- cUCGUcGCGCGGCGgUGGcgGGCGaCGGCg -3'
miRNA:   3'- -AGCAuUGCGCUGCgGCCa-CUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 200993 0.72 0.809321
Target:  5'- aCGgguCGCGACGCCGGUcugacucgaggccgcGugcGCGCGGCg -3'
miRNA:   3'- aGCauuGCGCUGCGGCCA---------------C---UGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.