Results 41 - 60 of 156 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 211548 | 0.73 | 0.761017 |
Target: 5'- aCG-AAUGCGGCGaCGGUGAuCGCGAUg -3' miRNA: 3'- aGCaUUGCGCUGCgGCCACU-GCGUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 65823 | 0.73 | 0.751685 |
Target: 5'- aUCGUGAaCGCGAUGCCGGcgGAgaucCGCGcGCa -3' miRNA: 3'- -AGCAUU-GCGCUGCGGCCa-CU----GCGU-UG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 109246 | 0.73 | 0.742253 |
Target: 5'- gCGgua-GCGGCGUCGGUGACGaUGACg -3' miRNA: 3'- aGCauugCGCUGCGGCCACUGC-GUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 166135 | 0.74 | 0.703696 |
Target: 5'- gUCGgcagaGACGuCGGCGCCGGcGGCaGCGGCg -3' miRNA: 3'- -AGCa----UUGC-GCUGCGGCCaCUG-CGUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 48101 | 0.75 | 0.654268 |
Target: 5'- --cUGugGCGGCGgCGGUGGCgGCGGCg -3' miRNA: 3'- agcAUugCGCUGCgGCCACUG-CGUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 176179 | 0.71 | 0.854709 |
Target: 5'- aCG-AugGCGACGgCGGcgGAgGCAGCu -3' miRNA: 3'- aGCaUugCGCUGCgGCCa-CUgCGUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 44514 | 0.71 | 0.862215 |
Target: 5'- uUCGUccggcGGCGCGAUGuuaCCGGggacgGugGCGGCg -3' miRNA: 3'- -AGCA-----UUGCGCUGC---GGCCa----CugCGUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 207367 | 0.69 | 0.920352 |
Target: 5'- gUGUcACGCGGCauCCGGUGAUGCuuCc -3' miRNA: 3'- aGCAuUGCGCUGc-GGCCACUGCGuuG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 135366 | 0.69 | 0.918147 |
Target: 5'- ---aGACGCGGCGaguucuucagggaCGGUGACGCGc- -3' miRNA: 3'- agcaUUGCGCUGCg------------GCCACUGCGUug -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 30914 | 0.69 | 0.914772 |
Target: 5'- cUCGUGucCGuCGAcauCGCCGG-GACGCAGa -3' miRNA: 3'- -AGCAUu-GC-GCU---GCGGCCaCUGCGUUg -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 114863 | 0.69 | 0.914772 |
Target: 5'- gUCGggGCGCGGCGCCc--GACGaCGAUg -3' miRNA: 3'- -AGCauUGCGCUGCGGccaCUGC-GUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 42056 | 0.69 | 0.914772 |
Target: 5'- aCGgcGUGCuGGCGCUGGUGugGCuGACc -3' miRNA: 3'- aGCauUGCG-CUGCGGCCACugCG-UUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 143138 | 0.69 | 0.902937 |
Target: 5'- cCGgcGcCGCGaccuGCGUCGGUGAUGaCGACg -3' miRNA: 3'- aGCauU-GCGC----UGCGGCCACUGC-GUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 97644 | 0.69 | 0.902321 |
Target: 5'- gCGgcACGgaGACGCCGGUuuguucgcgaucuGGCGCAGg -3' miRNA: 3'- aGCauUGCg-CUGCGGCCA-------------CUGCGUUg -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 66473 | 0.7 | 0.896685 |
Target: 5'- cUGUAcGCGCGGCuGUCGGaGACGCuGCa -3' miRNA: 3'- aGCAU-UGCGCUG-CGGCCaCUGCGuUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 168555 | 0.7 | 0.87663 |
Target: 5'- -gGUGGCaGCGGCGgCGGcGGCGaCAGCg -3' miRNA: 3'- agCAUUG-CGCUGCgGCCaCUGC-GUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 141148 | 0.7 | 0.87663 |
Target: 5'- gCGU--UGCGGCGUCGGUcacuucGACGUGACg -3' miRNA: 3'- aGCAuuGCGCUGCGGCCA------CUGCGUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 159890 | 0.7 | 0.869524 |
Target: 5'- gUCGUAACGUuaguucguuCGUCGGUGGCGaGACg -3' miRNA: 3'- -AGCAUUGCGcu-------GCGGCCACUGCgUUG- -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 77366 | 0.71 | 0.862215 |
Target: 5'- aCGcAGCGCGACGagcacCCGGUGAUGguGg -3' miRNA: 3'- aGCaUUGCGCUGC-----GGCCACUGCguUg -5' |
|||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 68227 | 0.71 | 0.862215 |
Target: 5'- gCGggugAGCGCGuCGgCGGUGACGagGACg -3' miRNA: 3'- aGCa---UUGCGCuGCgGCCACUGCg-UUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home