miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 77960 0.68 0.940401
Target:  5'- aCGUGACGUcgagccccgaGACGCUGGc--CGCGGCg -3'
miRNA:   3'- aGCAUUGCG----------CUGCGGCCacuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 65550 0.68 0.940401
Target:  5'- aCGcugGGCGCGuCGCCGGcgGGuCGCGAg -3'
miRNA:   3'- aGCa--UUGCGCuGCGGCCa-CU-GCGUUg -5'
15931 3' -54.6 NC_004065.1 + 56964 0.69 0.93083
Target:  5'- aCGgcGCgGgGACGCUGGUGAUGUucCg -3'
miRNA:   3'- aGCauUG-CgCUGCGGCCACUGCGuuG- -5'
15931 3' -54.6 NC_004065.1 + 123672 0.69 0.93083
Target:  5'- aCGUGGCGCGcUGCCcGUG-CaGCAGCg -3'
miRNA:   3'- aGCAUUGCGCuGCGGcCACuG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 117398 0.69 0.925705
Target:  5'- cUCGgccGCGCG-CGCUGGgcuCGCGGCg -3'
miRNA:   3'- -AGCau-UGCGCuGCGGCCacuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 207367 0.69 0.920352
Target:  5'- gUGUcACGCGGCauCCGGUGAUGCuuCc -3'
miRNA:   3'- aGCAuUGCGCUGc-GGCCACUGCGuuG- -5'
15931 3' -54.6 NC_004065.1 + 135366 0.69 0.918147
Target:  5'- ---aGACGCGGCGaguucuucagggaCGGUGACGCGc- -3'
miRNA:   3'- agcaUUGCGCUGCg------------GCCACUGCGUug -5'
15931 3' -54.6 NC_004065.1 + 168555 0.7 0.87663
Target:  5'- -gGUGGCaGCGGCGgCGGcGGCGaCAGCg -3'
miRNA:   3'- agCAUUG-CGCUGCgGCCaCUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 66473 0.7 0.896685
Target:  5'- cUGUAcGCGCGGCuGUCGGaGACGCuGCa -3'
miRNA:   3'- aGCAU-UGCGCUG-CGGCCaCUGCGuUG- -5'
15931 3' -54.6 NC_004065.1 + 97644 0.69 0.902321
Target:  5'- gCGgcACGgaGACGCCGGUuuguucgcgaucuGGCGCAGg -3'
miRNA:   3'- aGCauUGCg-CUGCGGCCA-------------CUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 143138 0.69 0.902937
Target:  5'- cCGgcGcCGCGaccuGCGUCGGUGAUGaCGACg -3'
miRNA:   3'- aGCauU-GCGC----UGCGGCCACUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 42056 0.69 0.914772
Target:  5'- aCGgcGUGCuGGCGCUGGUGugGCuGACc -3'
miRNA:   3'- aGCauUGCG-CUGCGGCCACugCG-UUG- -5'
15931 3' -54.6 NC_004065.1 + 114863 0.69 0.914772
Target:  5'- gUCGggGCGCGGCGCCc--GACGaCGAUg -3'
miRNA:   3'- -AGCauUGCGCUGCGGccaCUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 30914 0.69 0.914772
Target:  5'- cUCGUGucCGuCGAcauCGCCGG-GACGCAGa -3'
miRNA:   3'- -AGCAUu-GC-GCU---GCGGCCaCUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 67627 0.75 0.654268
Target:  5'- cCGUAcgGCGUucgaGAUGCCGGUGGCGUcgAGCg -3'
miRNA:   3'- aGCAU--UGCG----CUGCGGCCACUGCG--UUG- -5'
15931 3' -54.6 NC_004065.1 + 77626 0.76 0.584557
Target:  5'- cCGUGACGCcgacGGCGCUgucccugaugaaGGUGAUGCGGCa -3'
miRNA:   3'- aGCAUUGCG----CUGCGG------------CCACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 187930 0.76 0.574675
Target:  5'- aCGU-ACGuCGGCGCCGGcGACGCGcACa -3'
miRNA:   3'- aGCAuUGC-GCUGCGGCCaCUGCGU-UG- -5'
15931 3' -54.6 NC_004065.1 + 184786 0.77 0.533663
Target:  5'- ---cGACGCGACGggcggaggaggaCGGUGACGCAACg -3'
miRNA:   3'- agcaUUGCGCUGCg-----------GCCACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 32220 0.81 0.359714
Target:  5'- aCGUGGCGCcgcgGGCGCUGGUGAC-CAACg -3'
miRNA:   3'- aGCAUUGCG----CUGCGGCCACUGcGUUG- -5'
15931 3' -54.6 NC_004065.1 + 105128 0.66 0.983801
Target:  5'- cCGcugGACGCGGCGCacaucgaGGa-GCGCAACc -3'
miRNA:   3'- aGCa--UUGCGCUGCGg------CCacUGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.