miRNA display CGI


Results 81 - 100 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 31008 0.71 0.862215
Target:  5'- -gGUGGCGagauggaGAgGCCGGUGACgGCGAa -3'
miRNA:   3'- agCAUUGCg------CUgCGGCCACUG-CGUUg -5'
15931 3' -54.6 NC_004065.1 + 31629 0.7 0.869524
Target:  5'- uUCGUGcgGCuGaCGACGCCGGgcuacggGACGuCGGCg -3'
miRNA:   3'- -AGCAU--UG-C-GCUGCGGCCa------CUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 219255 0.7 0.869524
Target:  5'- ----cACGCGcCGCCGGUGuaacuCGCGAUa -3'
miRNA:   3'- agcauUGCGCuGCGGCCACu----GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 99604 0.7 0.87663
Target:  5'- -aGUAG-GUGACGCCGGUGAgGaCGAa -3'
miRNA:   3'- agCAUUgCGCUGCGGCCACUgC-GUUg -5'
15931 3' -54.6 NC_004065.1 + 4368 0.7 0.883528
Target:  5'- gCGUGgaGCGCGACGgCGGcGGCGgGAg -3'
miRNA:   3'- aGCAU--UGCGCUGCgGCCaCUGCgUUg -5'
15931 3' -54.6 NC_004065.1 + 8739 0.7 0.883528
Target:  5'- aCGUGACGaccgGAgGCCguGGUGGCgGCGGCa -3'
miRNA:   3'- aGCAUUGCg---CUgCGG--CCACUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 150788 0.72 0.797174
Target:  5'- cCGUcAGCGUGAucCGCUGGUG-CGCGAUg -3'
miRNA:   3'- aGCA-UUGCGCU--GCGGCCACuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 80381 0.72 0.782954
Target:  5'- gCGgcGCGUgcagggccugccgacGGCGCCGGUGACGguGg -3'
miRNA:   3'- aGCauUGCG---------------CUGCGGCCACUGCguUg -5'
15931 3' -54.6 NC_004065.1 + 205422 0.73 0.77024
Target:  5'- uUCGcAACaccgGCGGCGgCGGUGGCgGCGACg -3'
miRNA:   3'- -AGCaUUG----CGCUGCgGCCACUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 32220 0.81 0.359714
Target:  5'- aCGUGGCGCcgcgGGCGCUGGUGAC-CAACg -3'
miRNA:   3'- aGCAUUGCG----CUGCGGCCACUGcGUUG- -5'
15931 3' -54.6 NC_004065.1 + 184786 0.77 0.533663
Target:  5'- ---cGACGCGACGggcggaggaggaCGGUGACGCAACg -3'
miRNA:   3'- agcaUUGCGCUGCg-----------GCCACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 187930 0.76 0.574675
Target:  5'- aCGU-ACGuCGGCGCCGGcGACGCGcACa -3'
miRNA:   3'- aGCAuUGC-GCUGCGGCCaCUGCGU-UG- -5'
15931 3' -54.6 NC_004065.1 + 77626 0.76 0.584557
Target:  5'- cCGUGACGCcgacGGCGCUgucccugaugaaGGUGAUGCGGCa -3'
miRNA:   3'- aGCAUUGCG----CUGCGG------------CCACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 67627 0.75 0.654268
Target:  5'- cCGUAcgGCGUucgaGAUGCCGGUGGCGUcgAGCg -3'
miRNA:   3'- aGCAU--UGCG----CUGCGGCCACUGCG--UUG- -5'
15931 3' -54.6 NC_004065.1 + 82310 0.74 0.678107
Target:  5'- cCGUAGCGCGGCguccagcucauccgaGCCGGUGGuguCGCuGACg -3'
miRNA:   3'- aGCAUUGCGCUG---------------CGGCCACU---GCG-UUG- -5'
15931 3' -54.6 NC_004065.1 + 184498 0.74 0.713442
Target:  5'- cCGc--CGCGGCGCCgGGUGGCGUAGa -3'
miRNA:   3'- aGCauuGCGCUGCGG-CCACUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 102015 0.73 0.722158
Target:  5'- gUCGUAguugGCGCGGCGggccaccUCGGUGAccCGCGGCg -3'
miRNA:   3'- -AGCAU----UGCGCUGC-------GGCCACU--GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 187393 0.73 0.732729
Target:  5'- cUGgcGCGCGGCG-CGGUGugGCGu- -3'
miRNA:   3'- aGCauUGCGCUGCgGCCACugCGUug -5'
15931 3' -54.6 NC_004065.1 + 100574 0.73 0.760088
Target:  5'- cUCG-AGCGCGACGCCGGagaccuuagguaUGAuggcgguCGCGGCc -3'
miRNA:   3'- -AGCaUUGCGCUGCGGCC------------ACU-------GCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 133038 0.73 0.761017
Target:  5'- aCGUcgcagcAGCGCGACGgaCGGccGGCGCAGCa -3'
miRNA:   3'- aGCA------UUGCGCUGCg-GCCa-CUGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.