Results 21 - 40 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15931 | 3' | -54.6 | NC_004065.1 | + | 31629 | 0.7 | 0.869524 |
Target: 5'- uUCGUGcgGCuGaCGACGCCGGgcuacggGACGuCGGCg -3' miRNA: 3'- -AGCAU--UG-C-GCUGCGGCCa------CUGC-GUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 1543 | 0.71 | 0.847012 |
Target: 5'- uUCGcucccCGCGACGCCGGacuCGCGAUg -3' miRNA: 3'- -AGCauu--GCGCUGCGGCCacuGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 100574 | 0.73 | 0.760088 |
Target: 5'- cUCG-AGCGCGACGCCGGagaccuuagguaUGAuggcgguCGCGGCc -3' miRNA: 3'- -AGCaUUGCGCUGCGGCC------------ACU-------GCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 187930 | 0.76 | 0.574675 |
Target: 5'- aCGU-ACGuCGGCGCCGGcGACGCGcACa -3' miRNA: 3'- aGCAuUGC-GCUGCGGCCaCUGCGU-UG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 78601 | 0.68 | 0.939023 |
Target: 5'- gUCG-AACGCGACGUCgucgcgccgccugaGGUGaACGCGGu -3' miRNA: 3'- -AGCaUUGCGCUGCGG--------------CCAC-UGCGUUg -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 120104 | 0.7 | 0.890214 |
Target: 5'- cCGgGACGCGACGgCGGc--CGCGGCg -3' miRNA: 3'- aGCaUUGCGCUGCgGCCacuGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 133731 | 0.71 | 0.839129 |
Target: 5'- gUCGUGugGaCGGCGUCcGUGACGCc-- -3' miRNA: 3'- -AGCAUugC-GCUGCGGcCACUGCGuug -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 184786 | 0.77 | 0.533663 |
Target: 5'- ---cGACGCGACGggcggaggaggaCGGUGACGCAACg -3' miRNA: 3'- agcaUUGCGCUGCg-----------GCCACUGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 8739 | 0.7 | 0.883528 |
Target: 5'- aCGUGACGaccgGAgGCCguGGUGGCgGCGGCa -3' miRNA: 3'- aGCAUUGCg---CUgCGG--CCACUG-CGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 32220 | 0.81 | 0.359714 |
Target: 5'- aCGUGGCGCcgcgGGCGCUGGUGAC-CAACg -3' miRNA: 3'- aGCAUUGCG----CUGCGGCCACUGcGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 120150 | 0.71 | 0.847012 |
Target: 5'- gCGgccGCgGCGACGCCGGUGGCaccgccCGGCa -3' miRNA: 3'- aGCau-UG-CGCUGCGGCCACUGc-----GUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 219255 | 0.7 | 0.869524 |
Target: 5'- ----cACGCGcCGCCGGUGuaacuCGCGAUa -3' miRNA: 3'- agcauUGCGCuGCGGCCACu----GCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 150788 | 0.72 | 0.797174 |
Target: 5'- cCGUcAGCGUGAucCGCUGGUG-CGCGAUg -3' miRNA: 3'- aGCA-UUGCGCU--GCGGCCACuGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 133038 | 0.73 | 0.761017 |
Target: 5'- aCGUcgcagcAGCGCGACGgaCGGccGGCGCAGCa -3' miRNA: 3'- aGCA------UUGCGCUGCg-GCCa-CUGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 184498 | 0.74 | 0.713442 |
Target: 5'- cCGc--CGCGGCGCCgGGUGGCGUAGa -3' miRNA: 3'- aGCauuGCGCUGCGG-CCACUGCGUUg -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 77626 | 0.76 | 0.584557 |
Target: 5'- cCGUGACGCcgacGGCGCUgucccugaugaaGGUGAUGCGGCa -3' miRNA: 3'- aGCAUUGCG----CUGCGG------------CCACUGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 164467 | 0.68 | 0.944848 |
Target: 5'- -gGUAcuCGCGAccCGCCGGcGACGCGc- -3' miRNA: 3'- agCAUu-GCGCU--GCGGCCaCUGCGUug -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 147894 | 0.68 | 0.943976 |
Target: 5'- gCGUc-CGCGcCGCCGGauacgucagccgGGCGCAGCu -3' miRNA: 3'- aGCAuuGCGCuGCGGCCa-----------CUGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 87501 | 0.69 | 0.925705 |
Target: 5'- gUCGUGAaacCGCGuCGCugacaCGGUGucgacGCGCAGCg -3' miRNA: 3'- -AGCAUU---GCGCuGCG-----GCCAC-----UGCGUUG- -5' |
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15931 | 3' | -54.6 | NC_004065.1 | + | 59754 | 0.69 | 0.914772 |
Target: 5'- cCGac-CGCGugGCCgauGGUGGCgGCGGCg -3' miRNA: 3'- aGCauuGCGCugCGG---CCACUG-CGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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