miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 143099 0.69 0.93083
Target:  5'- aCGUGGgguccaucuuCGCGGCGCCGGgaaagGuCGuCGACa -3'
miRNA:   3'- aGCAUU----------GCGCUGCGGCCa----CuGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 133731 0.71 0.839129
Target:  5'- gUCGUGugGaCGGCGUCcGUGACGCc-- -3'
miRNA:   3'- -AGCAUugC-GCUGCGGcCACUGCGuug -5'
15931 3' -54.6 NC_004065.1 + 184786 0.77 0.533663
Target:  5'- ---cGACGCGACGggcggaggaggaCGGUGACGCAACg -3'
miRNA:   3'- agcaUUGCGCUGCg-----------GCCACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 199995 0.69 0.925705
Target:  5'- cUCGUu-CGUGcccgucaccaccGCGCCGGUGacggucGCGCAGCc -3'
miRNA:   3'- -AGCAuuGCGC------------UGCGGCCAC------UGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 32220 0.81 0.359714
Target:  5'- aCGUGGCGCcgcgGGCGCUGGUGAC-CAACg -3'
miRNA:   3'- aGCAUUGCG----CUGCGGCCACUGcGUUG- -5'
15931 3' -54.6 NC_004065.1 + 202739 0.67 0.96991
Target:  5'- ---aGACGCGuCGUCGGcGGCGCcGCc -3'
miRNA:   3'- agcaUUGCGCuGCGGCCaCUGCGuUG- -5'
15931 3' -54.6 NC_004065.1 + 77626 0.76 0.584557
Target:  5'- cCGUGACGCcgacGGCGCUgucccugaugaaGGUGAUGCGGCa -3'
miRNA:   3'- aGCAUUGCG----CUGCGG------------CCACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 106563 0.67 0.966953
Target:  5'- cUCGcAGCGCGGguCGCUGGgcGACGUGAUc -3'
miRNA:   3'- -AGCaUUGCGCU--GCGGCCa-CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 151356 0.67 0.963795
Target:  5'- cUCGggcgcCGCGGCGCCGGccgcuGCGCuGGCg -3'
miRNA:   3'- -AGCauu--GCGCUGCGGCCac---UGCG-UUG- -5'
15931 3' -54.6 NC_004065.1 + 104789 0.67 0.956861
Target:  5'- cUCGaGACGgGcaucgaGCUGGUGACGCGcuGCg -3'
miRNA:   3'- -AGCaUUGCgCug----CGGCCACUGCGU--UG- -5'
15931 3' -54.6 NC_004065.1 + 30775 0.68 0.949072
Target:  5'- gUCGgcgGACGCgGACGCCGacGAUGaCGACu -3'
miRNA:   3'- -AGCa--UUGCG-CUGCGGCcaCUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 164467 0.68 0.944848
Target:  5'- -gGUAcuCGCGAccCGCCGGcGACGCGc- -3'
miRNA:   3'- agCAUu-GCGCU--GCGGCCaCUGCGUug -5'
15931 3' -54.6 NC_004065.1 + 147894 0.68 0.943976
Target:  5'- gCGUc-CGCGcCGCCGGauacgucagccgGGCGCAGCu -3'
miRNA:   3'- aGCAuuGCGCuGCGGCCa-----------CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 86893 0.69 0.914772
Target:  5'- aCGcagguCGCGGCGCCGGUcucgcccucggcGGCGCGcGCg -3'
miRNA:   3'- aGCauu--GCGCUGCGGCCA------------CUGCGU-UG- -5'
15931 3' -54.6 NC_004065.1 + 8739 0.7 0.883528
Target:  5'- aCGUGACGaccgGAgGCCguGGUGGCgGCGGCa -3'
miRNA:   3'- aGCAUUGCg---CUgCGG--CCACUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 31629 0.7 0.869524
Target:  5'- uUCGUGcgGCuGaCGACGCCGGgcuacggGACGuCGGCg -3'
miRNA:   3'- -AGCAU--UG-C-GCUGCGGCCa------CUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 1543 0.71 0.847012
Target:  5'- uUCGcucccCGCGACGCCGGacuCGCGAUg -3'
miRNA:   3'- -AGCauu--GCGCUGCGGCCacuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 150788 0.72 0.797174
Target:  5'- cCGUcAGCGUGAucCGCUGGUG-CGCGAUg -3'
miRNA:   3'- aGCA-UUGCGCU--GCGGCCACuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 133038 0.73 0.761017
Target:  5'- aCGUcgcagcAGCGCGACGgaCGGccGGCGCAGCa -3'
miRNA:   3'- aGCA------UUGCGCUGCg-GCCa-CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 184498 0.74 0.713442
Target:  5'- cCGc--CGCGGCGCCgGGUGGCGUAGa -3'
miRNA:   3'- aGCauuGCGCUGCGG-CCACUGCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.