miRNA display CGI


Results 61 - 80 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15931 3' -54.6 NC_004065.1 + 152193 0.68 0.944848
Target:  5'- gUUGUuGCGCGAguaGuuGGUGAUGCGc- -3'
miRNA:   3'- -AGCAuUGCGCUg--CggCCACUGCGUug -5'
15931 3' -54.6 NC_004065.1 + 34178 0.68 0.949072
Target:  5'- cCGUGAguUGaCGGCGCCGGcgccaGACGgAGCa -3'
miRNA:   3'- aGCAUU--GC-GCUGCGGCCa----CUGCgUUG- -5'
15931 3' -54.6 NC_004065.1 + 205422 0.73 0.77024
Target:  5'- uUCGcAACaccgGCGGCGgCGGUGGCgGCGACg -3'
miRNA:   3'- -AGCaUUG----CGCUGCgGCCACUG-CGUUG- -5'
15931 3' -54.6 NC_004065.1 + 103530 0.72 0.814436
Target:  5'- gCGcAugGCGACGCgGGUGcagcGCGcCAACa -3'
miRNA:   3'- aGCaUugCGCUGCGgCCAC----UGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 1543 0.71 0.847012
Target:  5'- uUCGcucccCGCGACGCCGGacuCGCGAUg -3'
miRNA:   3'- -AGCauu--GCGCUGCGGCCacuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 31629 0.7 0.869524
Target:  5'- uUCGUGcgGCuGaCGACGCCGGgcuacggGACGuCGGCg -3'
miRNA:   3'- -AGCAU--UG-C-GCUGCGGCCa------CUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 120104 0.7 0.890214
Target:  5'- cCGgGACGCGACGgCGGc--CGCGGCg -3'
miRNA:   3'- aGCaUUGCGCUGCgGCCacuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 82772 0.69 0.925705
Target:  5'- cUCGgagaGCaGGCGuCCGGUGGCGcCGACc -3'
miRNA:   3'- -AGCauugCG-CUGC-GGCCACUGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 143099 0.69 0.93083
Target:  5'- aCGUGGgguccaucuuCGCGGCGCCGGgaaagGuCGuCGACa -3'
miRNA:   3'- aGCAUU----------GCGCUGCGGCCa----CuGC-GUUG- -5'
15931 3' -54.6 NC_004065.1 + 78601 0.68 0.939023
Target:  5'- gUCG-AACGCGACGUCgucgcgccgccugaGGUGaACGCGGu -3'
miRNA:   3'- -AGCaUUGCGCUGCGG--------------CCAC-UGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 153348 0.66 0.981912
Target:  5'- uUCGggGACgGCGGCGCCG---ACGCGAUc -3'
miRNA:   3'- -AGCa-UUG-CGCUGCGGCcacUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 60429 0.66 0.981714
Target:  5'- aCGUGAcggccccCGCGAaccgGCCGGaGcCGCGACa -3'
miRNA:   3'- aGCAUU-------GCGCUg---CGGCCaCuGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 122931 0.67 0.955372
Target:  5'- cCG-AACcCGACGCCGGcguuccagacgagGAUGCAGCu -3'
miRNA:   3'- aGCaUUGcGCUGCGGCCa------------CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 218240 0.67 0.956861
Target:  5'- aUGUGACGgugauaaaCGACGUCagguGGUGACGgAACa -3'
miRNA:   3'- aGCAUUGC--------GCUGCGG----CCACUGCgUUG- -5'
15931 3' -54.6 NC_004065.1 + 106563 0.67 0.966953
Target:  5'- cUCGcAGCGCGGguCGCUGGgcGACGUGAUc -3'
miRNA:   3'- -AGCaUUGCGCU--GCGGCCa-CUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 202739 0.67 0.96991
Target:  5'- ---aGACGCGuCGUCGGcGGCGCcGCc -3'
miRNA:   3'- agcaUUGCGCuGCGGCCaCUGCGuUG- -5'
15931 3' -54.6 NC_004065.1 + 186377 0.67 0.972674
Target:  5'- -gGUGAUGCGACGgCGGaGGCuGCGu- -3'
miRNA:   3'- agCAUUGCGCUGCgGCCaCUG-CGUug -5'
15931 3' -54.6 NC_004065.1 + 83317 0.66 0.975249
Target:  5'- gUCGUcgAGCGCGGCGUCgcccaugucgugGGUaACGCAGa -3'
miRNA:   3'- -AGCA--UUGCGCUGCGG------------CCAcUGCGUUg -5'
15931 3' -54.6 NC_004065.1 + 168553 0.66 0.977643
Target:  5'- -gGUggUG-GACGCCa-UGGCGCAGCg -3'
miRNA:   3'- agCAuuGCgCUGCGGccACUGCGUUG- -5'
15931 3' -54.6 NC_004065.1 + 29002 0.66 0.979861
Target:  5'- -gGUGGCGaGGCGCCGcGcGcACGCGGCc -3'
miRNA:   3'- agCAUUGCgCUGCGGC-CaC-UGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.