miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 3' -55.4 NC_004065.1 + 118239 0.66 0.965957
Target:  5'- cGGAGCCGUcgacggacgcguGGAGCucgccGGCGg-CCUCGAc -3'
miRNA:   3'- -UCUCGGCA------------CUUCGc----UCGCaaGGAGCU- -5'
15933 3' -55.4 NC_004065.1 + 216251 0.66 0.965957
Target:  5'- uGAGCCGacgacacggUGAucuCGGGC-UUCCUCGAa -3'
miRNA:   3'- uCUCGGC---------ACUuc-GCUCGcAAGGAGCU- -5'
15933 3' -55.4 NC_004065.1 + 66336 0.66 0.965957
Target:  5'- cGGAGCUGgaGGAGCGGcuGCGUUUCcUGAg -3'
miRNA:   3'- -UCUCGGCa-CUUCGCU--CGCAAGGaGCU- -5'
15933 3' -55.4 NC_004065.1 + 211146 0.66 0.965644
Target:  5'- -uGGCCGUucgggggGGAGCGGGCGUgCCggGAu -3'
miRNA:   3'- ucUCGGCA-------CUUCGCUCGCAaGGagCU- -5'
15933 3' -55.4 NC_004065.1 + 194813 0.66 0.96273
Target:  5'- --cGCUGU--AGCGAGCGgUCCUcCGAg -3'
miRNA:   3'- ucuCGGCAcuUCGCUCGCaAGGA-GCU- -5'
15933 3' -55.4 NC_004065.1 + 164877 0.66 0.955648
Target:  5'- cGAGCCGc-GAGCGGGaCGaUUCCUgGGu -3'
miRNA:   3'- uCUCGGCacUUCGCUC-GC-AAGGAgCU- -5'
15933 3' -55.4 NC_004065.1 + 77740 0.66 0.955648
Target:  5'- --cGCCGcagGAcugGGCGAGC--UCCUCGAc -3'
miRNA:   3'- ucuCGGCa--CU---UCGCUCGcaAGGAGCU- -5'
15933 3' -55.4 NC_004065.1 + 88287 0.67 0.947705
Target:  5'- --cGCCGUugauGAGGCcGGCGUucacgUCCUCGGc -3'
miRNA:   3'- ucuCGGCA----CUUCGcUCGCA-----AGGAGCU- -5'
15933 3' -55.4 NC_004065.1 + 146410 0.67 0.947705
Target:  5'- cGAGCUGUacucGAAGgGAgagcuGCGcgCCUCGAa -3'
miRNA:   3'- uCUCGGCA----CUUCgCU-----CGCaaGGAGCU- -5'
15933 3' -55.4 NC_004065.1 + 114950 0.67 0.947705
Target:  5'- aAGAGCCGaccGAGGCc-GCG-UCCUCGc -3'
miRNA:   3'- -UCUCGGCa--CUUCGcuCGCaAGGAGCu -5'
15933 3' -55.4 NC_004065.1 + 83127 0.67 0.943402
Target:  5'- gGGAGCUGUG-GGCGAgGCGUUggaggaaagCgUCGAu -3'
miRNA:   3'- -UCUCGGCACuUCGCU-CGCAA---------GgAGCU- -5'
15933 3' -55.4 NC_004065.1 + 61559 0.67 0.938873
Target:  5'- -aGGCCGaGAGGgGgacGGCGUUCCUCu- -3'
miRNA:   3'- ucUCGGCaCUUCgC---UCGCAAGGAGcu -5'
15933 3' -55.4 NC_004065.1 + 196624 0.67 0.93412
Target:  5'- cGGAugcGCCGg--GGCGAGCG--CCUCGAg -3'
miRNA:   3'- -UCU---CGGCacuUCGCUCGCaaGGAGCU- -5'
15933 3' -55.4 NC_004065.1 + 129417 0.68 0.929138
Target:  5'- uGGGGCUGcUGAAGCu-GUGcgCCUCGGa -3'
miRNA:   3'- -UCUCGGC-ACUUCGcuCGCaaGGAGCU- -5'
15933 3' -55.4 NC_004065.1 + 115336 0.68 0.918492
Target:  5'- aGGGGCUGcugcUGAGGCGGGCGaucggCC-CGAu -3'
miRNA:   3'- -UCUCGGC----ACUUCGCUCGCaa---GGaGCU- -5'
15933 3' -55.4 NC_004065.1 + 169176 0.68 0.918491
Target:  5'- cGGGCCGgucucGAuGUGAGUGUucgccgccgUCCUCGGu -3'
miRNA:   3'- uCUCGGCa----CUuCGCUCGCA---------AGGAGCU- -5'
15933 3' -55.4 NC_004065.1 + 126222 0.68 0.918491
Target:  5'- --uGCCGUacGAGGCGGGCGU-CUUCa- -3'
miRNA:   3'- ucuCGGCA--CUUCGCUCGCAaGGAGcu -5'
15933 3' -55.4 NC_004065.1 + 100765 0.68 0.900822
Target:  5'- cGGuAGCUGUGggGCGGGCucagCUUCGc -3'
miRNA:   3'- -UC-UCGGCACuuCGCUCGcaa-GGAGCu -5'
15933 3' -55.4 NC_004065.1 + 109024 0.69 0.894486
Target:  5'- aAGAGCUGcgaaaUGAGuGCGAGCGcUUCCgCGGc -3'
miRNA:   3'- -UCUCGGC-----ACUU-CGCUCGC-AAGGaGCU- -5'
15933 3' -55.4 NC_004065.1 + 107804 0.69 0.881162
Target:  5'- -uGGCCGUG-GGCGAGCGggCCa--- -3'
miRNA:   3'- ucUCGGCACuUCGCUCGCaaGGagcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.