Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15933 | 3' | -55.4 | NC_004065.1 | + | 573 | 1.09 | 0.004971 |
Target: 5'- gAGAGCCGUGAAGCGAGCGUUCCUCGAg -3' miRNA: 3'- -UCUCGGCACUUCGCUCGCAAGGAGCU- -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 229408 | 0.8 | 0.326528 |
Target: 5'- aAGAGCgGUGAAGCGAcUGUUgCCUCGAa -3' miRNA: 3'- -UCUCGgCACUUCGCUcGCAA-GGAGCU- -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 24971 | 0.71 | 0.793986 |
Target: 5'- -cGGUCGUG-GGUGGGCGUcCCUCGGc -3' miRNA: 3'- ucUCGGCACuUCGCUCGCAaGGAGCU- -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 42698 | 0.7 | 0.859605 |
Target: 5'- cGGAGCUGcaGAggucGGCGAGCGcUCCUCc- -3' miRNA: 3'- -UCUCGGCa-CU----UCGCUCGCaAGGAGcu -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 4409 | 0.7 | 0.862585 |
Target: 5'- cGGAGCgGUGGccacGGCGGGCcugacgcugacccucGggCCUCGAg -3' miRNA: 3'- -UCUCGgCACU----UCGCUCG---------------CaaGGAGCU- -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 143513 | 0.69 | 0.874181 |
Target: 5'- gGGAuGCUGUG-AGC-AGCG-UCCUCGAc -3' miRNA: 3'- -UCU-CGGCACuUCGcUCGCaAGGAGCU- -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 107804 | 0.69 | 0.881162 |
Target: 5'- -uGGCCGUG-GGCGAGCGggCCa--- -3' miRNA: 3'- ucUCGGCACuUCGCUCGCaaGGagcu -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 109024 | 0.69 | 0.894486 |
Target: 5'- aAGAGCUGcgaaaUGAGuGCGAGCGcUUCCgCGGc -3' miRNA: 3'- -UCUCGGC-----ACUU-CGCUCGC-AAGGaGCU- -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 100765 | 0.68 | 0.900822 |
Target: 5'- cGGuAGCUGUGggGCGGGCucagCUUCGc -3' miRNA: 3'- -UC-UCGGCACuuCGCUCGcaa-GGAGCu -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 169176 | 0.68 | 0.918491 |
Target: 5'- cGGGCCGgucucGAuGUGAGUGUucgccgccgUCCUCGGu -3' miRNA: 3'- uCUCGGCa----CUuCGCUCGCA---------AGGAGCU- -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 126222 | 0.68 | 0.918491 |
Target: 5'- --uGCCGUacGAGGCGGGCGU-CUUCa- -3' miRNA: 3'- ucuCGGCA--CUUCGCUCGCAaGGAGcu -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 115336 | 0.68 | 0.918492 |
Target: 5'- aGGGGCUGcugcUGAGGCGGGCGaucggCC-CGAu -3' miRNA: 3'- -UCUCGGC----ACUUCGCUCGCaa---GGaGCU- -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 129417 | 0.68 | 0.929138 |
Target: 5'- uGGGGCUGcUGAAGCu-GUGcgCCUCGGa -3' miRNA: 3'- -UCUCGGC-ACUUCGcuCGCaaGGAGCU- -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 196624 | 0.67 | 0.93412 |
Target: 5'- cGGAugcGCCGg--GGCGAGCG--CCUCGAg -3' miRNA: 3'- -UCU---CGGCacuUCGCUCGCaaGGAGCU- -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 61559 | 0.67 | 0.938873 |
Target: 5'- -aGGCCGaGAGGgGgacGGCGUUCCUCu- -3' miRNA: 3'- ucUCGGCaCUUCgC---UCGCAAGGAGcu -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 83127 | 0.67 | 0.943402 |
Target: 5'- gGGAGCUGUG-GGCGAgGCGUUggaggaaagCgUCGAu -3' miRNA: 3'- -UCUCGGCACuUCGCU-CGCAA---------GgAGCU- -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 114950 | 0.67 | 0.947705 |
Target: 5'- aAGAGCCGaccGAGGCc-GCG-UCCUCGc -3' miRNA: 3'- -UCUCGGCa--CUUCGcuCGCaAGGAGCu -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 146410 | 0.67 | 0.947705 |
Target: 5'- cGAGCUGUacucGAAGgGAgagcuGCGcgCCUCGAa -3' miRNA: 3'- uCUCGGCA----CUUCgCU-----CGCaaGGAGCU- -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 88287 | 0.67 | 0.947705 |
Target: 5'- --cGCCGUugauGAGGCcGGCGUucacgUCCUCGGc -3' miRNA: 3'- ucuCGGCA----CUUCGcUCGCA-----AGGAGCU- -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 77740 | 0.66 | 0.955648 |
Target: 5'- --cGCCGcagGAcugGGCGAGC--UCCUCGAc -3' miRNA: 3'- ucuCGGCa--CU---UCGCUCGcaAGGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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