Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15933 | 3' | -55.4 | NC_004065.1 | + | 66336 | 0.66 | 0.965957 |
Target: 5'- cGGAGCUGgaGGAGCGGcuGCGUUUCcUGAg -3' miRNA: 3'- -UCUCGGCa-CUUCGCU--CGCAAGGaGCU- -5' |
|||||||
15933 | 3' | -55.4 | NC_004065.1 | + | 61559 | 0.67 | 0.938873 |
Target: 5'- -aGGCCGaGAGGgGgacGGCGUUCCUCu- -3' miRNA: 3'- ucUCGGCaCUUCgC---UCGCAAGGAGcu -5' |
|||||||
15933 | 3' | -55.4 | NC_004065.1 | + | 42698 | 0.7 | 0.859605 |
Target: 5'- cGGAGCUGcaGAggucGGCGAGCGcUCCUCc- -3' miRNA: 3'- -UCUCGGCa-CU----UCGCUCGCaAGGAGcu -5' |
|||||||
15933 | 3' | -55.4 | NC_004065.1 | + | 24971 | 0.71 | 0.793986 |
Target: 5'- -cGGUCGUG-GGUGGGCGUcCCUCGGc -3' miRNA: 3'- ucUCGGCACuUCGCUCGCAaGGAGCU- -5' |
|||||||
15933 | 3' | -55.4 | NC_004065.1 | + | 4409 | 0.7 | 0.862585 |
Target: 5'- cGGAGCgGUGGccacGGCGGGCcugacgcugacccucGggCCUCGAg -3' miRNA: 3'- -UCUCGgCACU----UCGCUCG---------------CaaGGAGCU- -5' |
|||||||
15933 | 3' | -55.4 | NC_004065.1 | + | 573 | 1.09 | 0.004971 |
Target: 5'- gAGAGCCGUGAAGCGAGCGUUCCUCGAg -3' miRNA: 3'- -UCUCGGCACUUCGCUCGCAAGGAGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home