Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15933 | 3' | -55.4 | NC_004065.1 | + | 126222 | 0.68 | 0.918491 |
Target: 5'- --uGCCGUacGAGGCGGGCGU-CUUCa- -3' miRNA: 3'- ucuCGGCA--CUUCGCUCGCAaGGAGcu -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 169176 | 0.68 | 0.918491 |
Target: 5'- cGGGCCGgucucGAuGUGAGUGUucgccgccgUCCUCGGu -3' miRNA: 3'- uCUCGGCa----CUuCGCUCGCA---------AGGAGCU- -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 61559 | 0.67 | 0.938873 |
Target: 5'- -aGGCCGaGAGGgGgacGGCGUUCCUCu- -3' miRNA: 3'- ucUCGGCaCUUCgC---UCGCAAGGAGcu -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 88287 | 0.67 | 0.947705 |
Target: 5'- --cGCCGUugauGAGGCcGGCGUucacgUCCUCGGc -3' miRNA: 3'- ucuCGGCA----CUUCGcUCGCA-----AGGAGCU- -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 66336 | 0.66 | 0.965957 |
Target: 5'- cGGAGCUGgaGGAGCGGcuGCGUUUCcUGAg -3' miRNA: 3'- -UCUCGGCa-CUUCGCU--CGCAAGGaGCU- -5' |
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15933 | 3' | -55.4 | NC_004065.1 | + | 573 | 1.09 | 0.004971 |
Target: 5'- gAGAGCCGUGAAGCGAGCGUUCCUCGAg -3' miRNA: 3'- -UCUCGGCACUUCGCUCGCAAGGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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