miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 111846 0.66 0.993632
Target:  5'- --cCGAacGGCGGCAGcCGUgacggcCGCCGCc -3'
miRNA:   3'- aaaGCU--CCGUUGUCaGCGaa----GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 164556 0.66 0.993632
Target:  5'- -gUCGAgccGGCGGCGG-CGCcg-ACCGCu -3'
miRNA:   3'- aaAGCU---CCGUUGUCaGCGaagUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 151735 0.66 0.993632
Target:  5'- --cCGAGGCccucGAgAGcCGCUacgacCACCGCa -3'
miRNA:   3'- aaaGCUCCG----UUgUCaGCGAa----GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 19570 0.66 0.993632
Target:  5'- -gUCGGuGGCGGCGGUaGCgUCgGCUGCg -3'
miRNA:   3'- aaAGCU-CCGUUGUCAgCGaAG-UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 174482 0.66 0.993632
Target:  5'- --cCGGGGC-ACGGUaacaucaaGUUccUCGCCGCa -3'
miRNA:   3'- aaaGCUCCGuUGUCAg-------CGA--AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 61407 0.66 0.993632
Target:  5'- --cCGcGGCAccagcgccaGCAGcCGCUUCugccuCCGCa -3'
miRNA:   3'- aaaGCuCCGU---------UGUCaGCGAAGu----GGCG- -5'
15933 5' -52.5 NC_004065.1 + 167155 0.66 0.993632
Target:  5'- ---gGAGGcCAGCAGacCGCcacCACCGCu -3'
miRNA:   3'- aaagCUCC-GUUGUCa-GCGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 98130 0.66 0.993541
Target:  5'- -cUCGAaccaggcGGCGGCGGUgCGCaUCGCgUGCa -3'
miRNA:   3'- aaAGCU-------CCGUUGUCA-GCGaAGUG-GCG- -5'
15933 5' -52.5 NC_004065.1 + 78601 0.66 0.992678
Target:  5'- -gUCGAacGCGAC-GUCGUcgCGCCGCc -3'
miRNA:   3'- aaAGCUc-CGUUGuCAGCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 197051 0.66 0.992678
Target:  5'- --gCGAGGCcuCcGUCauGCUcCGCCGCg -3'
miRNA:   3'- aaaGCUCCGuuGuCAG--CGAaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 98147 0.66 0.992678
Target:  5'- --cUGGcGGUGAUAGUCGC--CGCCGCc -3'
miRNA:   3'- aaaGCU-CCGUUGUCAGCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 20892 0.66 0.992678
Target:  5'- --gCGAaGCAACAGUCuCgUCACCGg -3'
miRNA:   3'- aaaGCUcCGUUGUCAGcGaAGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 101423 0.66 0.992678
Target:  5'- -gUgGGGGCGgcuggcgcguGCGGaugCGcCUUCGCCGCc -3'
miRNA:   3'- aaAgCUCCGU----------UGUCa--GC-GAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 116830 0.66 0.992678
Target:  5'- -gUCGGGGCAGCcgcuGUCGUccaugCGCCu- -3'
miRNA:   3'- aaAGCUCCGUUGu---CAGCGaa---GUGGcg -5'
15933 5' -52.5 NC_004065.1 + 94721 0.66 0.992577
Target:  5'- -cUCGAgcgggccgaagucGGCGGCGGagacgCGUUUCAgCGCg -3'
miRNA:   3'- aaAGCU-------------CCGUUGUCa----GCGAAGUgGCG- -5'
15933 5' -52.5 NC_004065.1 + 128410 0.66 0.991614
Target:  5'- --cCGAgcGGCAGCGG-CgGCggCGCCGCc -3'
miRNA:   3'- aaaGCU--CCGUUGUCaG-CGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 201146 0.66 0.991614
Target:  5'- -cUCGGGGCGccaGCAGUC-CUcgUCACgcaGCa -3'
miRNA:   3'- aaAGCUCCGU---UGUCAGcGA--AGUGg--CG- -5'
15933 5' -52.5 NC_004065.1 + 30614 0.66 0.990432
Target:  5'- --cCGAGGCAGCGacgcguguccGUC-CUUCACC-Cg -3'
miRNA:   3'- aaaGCUCCGUUGU----------CAGcGAAGUGGcG- -5'
15933 5' -52.5 NC_004065.1 + 208336 0.66 0.990432
Target:  5'- ---aGAGGgAucGCGGUCGCguaUCugACCGCg -3'
miRNA:   3'- aaagCUCCgU--UGUCAGCGa--AG--UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 122227 0.66 0.990432
Target:  5'- -cUCGAgcgGGcCGGCgGGUCGUUccugUCGCCGCu -3'
miRNA:   3'- aaAGCU---CC-GUUG-UCAGCGA----AGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.