miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 184902 0.71 0.907026
Target:  5'- --aCGAGucCGACgAGUCGcCUUCGCCGCc -3'
miRNA:   3'- aaaGCUCc-GUUG-UCAGC-GAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 115995 0.71 0.907026
Target:  5'- --cUGAGGCGACAGagGCgcu-CCGCg -3'
miRNA:   3'- aaaGCUCCGUUGUCagCGaaguGGCG- -5'
15933 5' -52.5 NC_004065.1 + 161848 0.71 0.900728
Target:  5'- --gCGGGGcCGACAgcuccGUCGCgcgCGCCGCc -3'
miRNA:   3'- aaaGCUCC-GUUGU-----CAGCGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 200648 0.71 0.887429
Target:  5'- -cUCGAGGCGAgauCGG-CGUUUUAUCGCc -3'
miRNA:   3'- aaAGCUCCGUU---GUCaGCGAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 157130 0.71 0.913086
Target:  5'- ---gGGGGCAuCA-UCGCgUUCACCGCg -3'
miRNA:   3'- aaagCUCCGUuGUcAGCG-AAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 113584 0.71 0.900728
Target:  5'- aUUCGu-GCGACGGgCGCUaCACCGCc -3'
miRNA:   3'- aAAGCucCGUUGUCaGCGAaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 48467 0.71 0.894195
Target:  5'- ---gGAGGUGACGGUgcCGUagUCGCCGCg -3'
miRNA:   3'- aaagCUCCGUUGUCA--GCGa-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 17421 0.71 0.894195
Target:  5'- ---gGAGGCAagaGCGGUCGUUUgGCgGCc -3'
miRNA:   3'- aaagCUCCGU---UGUCAGCGAAgUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 200752 0.71 0.887429
Target:  5'- --aCGAGGCGGCucacgcgucGGUCGCUcucUCGUCGCg -3'
miRNA:   3'- aaaGCUCCGUUG---------UCAGCGA---AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 196808 0.7 0.929824
Target:  5'- --aCGAGGCggUggggGGUCGUggUCACCuGCg -3'
miRNA:   3'- aaaGCUCCGuuG----UCAGCGa-AGUGG-CG- -5'
15933 5' -52.5 NC_004065.1 + 96117 0.7 0.939775
Target:  5'- cUUCGAGGC---GGUCGCU---CCGCg -3'
miRNA:   3'- aAAGCUCCGuugUCAGCGAaguGGCG- -5'
15933 5' -52.5 NC_004065.1 + 196713 0.7 0.918907
Target:  5'- cUUCGAGGagaauuACGuUCGCgUCGCCGCc -3'
miRNA:   3'- aAAGCUCCgu----UGUcAGCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 28995 0.7 0.929824
Target:  5'- -----cGGCGGCGGUgGCgaggCGCCGCg -3'
miRNA:   3'- aaagcuCCGUUGUCAgCGaa--GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 37159 0.7 0.938343
Target:  5'- -aUCGGcGGCAGCAGUgucagcaacuccgcCGCcgUCACCGa -3'
miRNA:   3'- aaAGCU-CCGUUGUCA--------------GCGa-AGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 101852 0.7 0.93492
Target:  5'- ---gGGGGCGuCGGgggCGCUaUCGCCGCc -3'
miRNA:   3'- aaagCUCCGUuGUCa--GCGA-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 154169 0.69 0.94439
Target:  5'- --gCGGcGGCGGCuGUUGCUggcUCGCCGUc -3'
miRNA:   3'- aaaGCU-CCGUUGuCAGCGA---AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 96843 0.69 0.960504
Target:  5'- uUUUCGAGaCGGCg--CGCUgUCGCCGCg -3'
miRNA:   3'- -AAAGCUCcGUUGucaGCGA-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 195106 0.69 0.960504
Target:  5'- ---aGGGGCGuCAGcUCGCcggcggugUCGCCGCa -3'
miRNA:   3'- aaagCUCCGUuGUC-AGCGa-------AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 97665 0.69 0.958321
Target:  5'- gUUCGcgaucuGGCGcaggaugugauacucGCGGUCGCUgcCGCCGCc -3'
miRNA:   3'- aAAGCu-----CCGU---------------UGUCAGCGAa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 97184 0.69 0.956821
Target:  5'- cUUCGGGGCuc--GUCGUcgCGCUGCg -3'
miRNA:   3'- aAAGCUCCGuuguCAGCGaaGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.