miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 217610 0.68 0.973063
Target:  5'- aUUCGAGGaGACGGUagcuacCGUUgaucgagagacUCGCCGCg -3'
miRNA:   3'- aAAGCUCCgUUGUCA------GCGA-----------AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 62126 0.68 0.973063
Target:  5'- ---gGAGGCGGCA-UCGU--CGCCGCg -3'
miRNA:   3'- aaagCUCCGUUGUcAGCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 103140 0.68 0.970239
Target:  5'- --cCGAGGCGuuCAGcaCGCguagCACCGCc -3'
miRNA:   3'- aaaGCUCCGUu-GUCa-GCGaa--GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 94004 0.68 0.967208
Target:  5'- uUUUCGGGGUccCGGUUccgGCUUCGuuGCu -3'
miRNA:   3'- -AAAGCUCCGuuGUCAG---CGAAGUggCG- -5'
15933 5' -52.5 NC_004065.1 + 164638 0.68 0.963965
Target:  5'- -cUCgGAGG-AACAGUCGggUCGCgGCg -3'
miRNA:   3'- aaAG-CUCCgUUGUCAGCgaAGUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 66126 0.68 0.963965
Target:  5'- --cCGAGGCGcUGGcgCGCUggGCCGCg -3'
miRNA:   3'- aaaGCUCCGUuGUCa-GCGAagUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 54560 0.68 0.963965
Target:  5'- --aUGGGGCGugcucGCAGccuccugUGCUUCGCCGUg -3'
miRNA:   3'- aaaGCUCCGU-----UGUCa------GCGAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 136629 0.68 0.975689
Target:  5'- --cCGAGGCGGCGGUC-CggaGCgGCg -3'
miRNA:   3'- aaaGCUCCGUUGUCAGcGaagUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 33444 0.68 0.975689
Target:  5'- --aCGGGGCGACuGUgcUGCUUCugGCaCGCg -3'
miRNA:   3'- aaaGCUCCGUUGuCA--GCGAAG--UG-GCG- -5'
15933 5' -52.5 NC_004065.1 + 44297 0.68 0.975689
Target:  5'- --gCGAGaGCAAgAGUCcCUUCACCa- -3'
miRNA:   3'- aaaGCUC-CGUUgUCAGcGAAGUGGcg -5'
15933 5' -52.5 NC_004065.1 + 185859 0.68 0.970239
Target:  5'- -gUUGAGGCGcgaGCcuUCGCUgCACCGUu -3'
miRNA:   3'- aaAGCUCCGU---UGucAGCGAaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 166154 0.67 0.982443
Target:  5'- --cCGGcGGCAGCGG-CGCcgacgucgugCACCGCg -3'
miRNA:   3'- aaaGCU-CCGUUGUCaGCGaa--------GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 85647 0.67 0.987677
Target:  5'- ---gGAGGCAcCAGaUCGU--CACCGCc -3'
miRNA:   3'- aaagCUCCGUuGUC-AGCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 30965 0.67 0.986087
Target:  5'- uUUUCGGGGaagacgaGugGGaugCGC-UCGCCGCg -3'
miRNA:   3'- -AAAGCUCCg------UugUCa--GCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 83000 0.67 0.987677
Target:  5'- --cCGucGGCAGucUAGUCGCUUUcuGCUGCg -3'
miRNA:   3'- aaaGCu-CCGUU--GUCAGCGAAG--UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 229487 0.67 0.980371
Target:  5'- ---gGGGGCGcucgcACAGggggCGCgcCACCGCg -3'
miRNA:   3'- aaagCUCCGU-----UGUCa---GCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 62082 0.67 0.986741
Target:  5'- aUUCaGGGGCGacggcagcggcagcgGCGGUCGUUaCGCuCGCg -3'
miRNA:   3'- aAAG-CUCCGU---------------UGUCAGCGAaGUG-GCG- -5'
15933 5' -52.5 NC_004065.1 + 117459 0.67 0.986087
Target:  5'- -gUCGuccGGCuccGCGGcCGC-UCGCCGCc -3'
miRNA:   3'- aaAGCu--CCGu--UGUCaGCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 85486 0.67 0.983978
Target:  5'- cUUCGAGGCcugagucGGC-GUgGCUuccuucuuuccggUCGCCGCg -3'
miRNA:   3'- aAAGCUCCG-------UUGuCAgCGA-------------AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 35693 0.67 0.982443
Target:  5'- -aUCGAGGUcgUcGUCGCUgaugauCCGCa -3'
miRNA:   3'- aaAGCUCCGuuGuCAGCGAagu---GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.