Results 81 - 100 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15933 | 5' | -52.5 | NC_004065.1 | + | 229487 | 0.67 | 0.980371 |
Target: 5'- ---gGGGGCGcucgcACAGggggCGCgcCACCGCg -3' miRNA: 3'- aaagCUCCGU-----UGUCa---GCGaaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 152847 | 0.67 | 0.980371 |
Target: 5'- -aUCGAGGuCGGCAGccagaGC--CACCGCa -3' miRNA: 3'- aaAGCUCC-GUUGUCag---CGaaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 199848 | 0.67 | 0.984163 |
Target: 5'- cUUCGGggauguuGGUAACAGcCGCUacaUC-CCGCg -3' miRNA: 3'- aAAGCU-------CCGUUGUCaGCGA---AGuGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 83000 | 0.67 | 0.987677 |
Target: 5'- --cCGucGGCAGucUAGUCGCUUUcuGCUGCg -3' miRNA: 3'- aaaGCu-CCGUU--GUCAGCGAAG--UGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 85647 | 0.67 | 0.987677 |
Target: 5'- ---gGAGGCAcCAGaUCGU--CACCGCc -3' miRNA: 3'- aaagCUCCGUuGUC-AGCGaaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 62082 | 0.67 | 0.986741 |
Target: 5'- aUUCaGGGGCGacggcagcggcagcgGCGGUCGUUaCGCuCGCg -3' miRNA: 3'- aAAG-CUCCGU---------------UGUCAGCGAaGUG-GCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 117459 | 0.67 | 0.986087 |
Target: 5'- -gUCGuccGGCuccGCGGcCGC-UCGCCGCc -3' miRNA: 3'- aaAGCu--CCGu--UGUCaGCGaAGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 85486 | 0.67 | 0.983978 |
Target: 5'- cUUCGAGGCcugagucGGC-GUgGCUuccuucuuuccggUCGCCGCg -3' miRNA: 3'- aAAGCUCCG-------UUGuCAgCGA-------------AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 35693 | 0.67 | 0.982443 |
Target: 5'- -aUCGAGGUcgUcGUCGCUgaugauCCGCa -3' miRNA: 3'- aaAGCUCCGuuGuCAGCGAagu---GGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 166154 | 0.67 | 0.982443 |
Target: 5'- --cCGGcGGCAGCGG-CGCcgacgucgugCACCGCg -3' miRNA: 3'- aaaGCU-CCGUUGUCaGCGaa--------GUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 164556 | 0.66 | 0.993632 |
Target: 5'- -gUCGAgccGGCGGCGG-CGCcg-ACCGCu -3' miRNA: 3'- aaAGCU---CCGUUGUCaGCGaagUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 151735 | 0.66 | 0.993632 |
Target: 5'- --cCGAGGCccucGAgAGcCGCUacgacCACCGCa -3' miRNA: 3'- aaaGCUCCG----UUgUCaGCGAa----GUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 30614 | 0.66 | 0.990432 |
Target: 5'- --cCGAGGCAGCGacgcguguccGUC-CUUCACC-Cg -3' miRNA: 3'- aaaGCUCCGUUGU----------CAGcGAAGUGGcG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 19570 | 0.66 | 0.993632 |
Target: 5'- -gUCGGuGGCGGCGGUaGCgUCgGCUGCg -3' miRNA: 3'- aaAGCU-CCGUUGUCAgCGaAG-UGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 128410 | 0.66 | 0.991614 |
Target: 5'- --cCGAgcGGCAGCGG-CgGCggCGCCGCc -3' miRNA: 3'- aaaGCU--CCGUUGUCaG-CGaaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 98147 | 0.66 | 0.992678 |
Target: 5'- --cUGGcGGUGAUAGUCGC--CGCCGCc -3' miRNA: 3'- aaaGCU-CCGUUGUCAGCGaaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 201146 | 0.66 | 0.991614 |
Target: 5'- -cUCGGGGCGccaGCAGUC-CUcgUCACgcaGCa -3' miRNA: 3'- aaAGCUCCGU---UGUCAGcGA--AGUGg--CG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 122227 | 0.66 | 0.990432 |
Target: 5'- -cUCGAgcgGGcCGGCgGGUCGUUccugUCGCCGCu -3' miRNA: 3'- aaAGCU---CC-GUUG-UCAGCGA----AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 208336 | 0.66 | 0.990432 |
Target: 5'- ---aGAGGgAucGCGGUCGCguaUCugACCGCg -3' miRNA: 3'- aaagCUCCgU--UGUCAGCGa--AG--UGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 111846 | 0.66 | 0.993632 |
Target: 5'- --cCGAacGGCGGCAGcCGUgacggcCGCCGCc -3' miRNA: 3'- aaaGCU--CCGUUGUCaGCGaa----GUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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