miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 612 1.1 0.007853
Target:  5'- gUUUCGAGGCAACAGUCGCUUCACCGCu -3'
miRNA:   3'- -AAAGCUCCGUUGUCAGCGAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 146734 0.82 0.350144
Target:  5'- --aCGAGGCAGCGGUCGgc-CGCCGCg -3'
miRNA:   3'- aaaGCUCCGUUGUCAGCgaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 211947 0.77 0.621013
Target:  5'- --aCGAGGCugcgGCGGUCGCU--GCCGCc -3'
miRNA:   3'- aaaGCUCCGu---UGUCAGCGAagUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 38176 0.76 0.672395
Target:  5'- -aUCGcGGCGAUAGUCGCggccgUCACCa- -3'
miRNA:   3'- aaAGCuCCGUUGUCAGCGa----AGUGGcg -5'
15933 5' -52.5 NC_004065.1 + 16534 0.76 0.692776
Target:  5'- cUUUCGuGGCGucgACGGUCGCggCgACCGCu -3'
miRNA:   3'- -AAAGCuCCGU---UGUCAGCGaaG-UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 209714 0.75 0.72294
Target:  5'- ---aGAGGCuGCGGUCGuCUUCACCa- -3'
miRNA:   3'- aaagCUCCGuUGUCAGC-GAAGUGGcg -5'
15933 5' -52.5 NC_004065.1 + 191842 0.75 0.732849
Target:  5'- -gUCGuGGUGACGGcCGCgacuaUCGCCGCg -3'
miRNA:   3'- aaAGCuCCGUUGUCaGCGa----AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 2068 0.74 0.762009
Target:  5'- --gCGAGGCAGCuccuGuUCGUUUCACgCGCu -3'
miRNA:   3'- aaaGCUCCGUUGu---C-AGCGAAGUG-GCG- -5'
15933 5' -52.5 NC_004065.1 + 229450 0.74 0.771509
Target:  5'- -cUCGAGG-AACGcUCGCUUCACgGCu -3'
miRNA:   3'- aaAGCUCCgUUGUcAGCGAAGUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 91174 0.74 0.771509
Target:  5'- -gUCGcAGGCGACGGcCGCggaagCGCCGUc -3'
miRNA:   3'- aaAGC-UCCGUUGUCaGCGaa---GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 119831 0.74 0.780883
Target:  5'- -cUCGAcgggcGGCGGCGcGUCGCggcCGCCGCa -3'
miRNA:   3'- aaAGCU-----CCGUUGU-CAGCGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 103294 0.73 0.798314
Target:  5'- cUUCGAGGCccgcggcGGCAGgcucaGCggUCGCCGCa -3'
miRNA:   3'- aAAGCUCCG-------UUGUCag---CGa-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 67465 0.73 0.808158
Target:  5'- --cCGAGGCGGCGGUguacgugugcgaCGaCUUCACCGa -3'
miRNA:   3'- aaaGCUCCGUUGUCA------------GC-GAAGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 170300 0.73 0.816939
Target:  5'- ---aGAGuccGCGACGGUCGCcgugCGCCGCg -3'
miRNA:   3'- aaagCUC---CGUUGUCAGCGaa--GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 63053 0.73 0.816939
Target:  5'- -cUgGGGGCGgcGCAGUCGCaggagUCGCCGg -3'
miRNA:   3'- aaAgCUCCGU--UGUCAGCGa----AGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 162281 0.73 0.837304
Target:  5'- aUUUCG-GGCGguugcucgugaacgaGCGGUCGCUcgUCACgGCg -3'
miRNA:   3'- -AAAGCuCCGU---------------UGUCAGCGA--AGUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 205169 0.72 0.85345
Target:  5'- -gUCGAGGCcGCcGUCGCcgccaacaucgggCGCCGCg -3'
miRNA:   3'- aaAGCUCCGuUGuCAGCGaa-----------GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 17931 0.72 0.858138
Target:  5'- -aUCGGGGCAgguacgauGgGGUCGCaggUCGCCGg -3'
miRNA:   3'- aaAGCUCCGU--------UgUCAGCGa--AGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 61377 0.72 0.87322
Target:  5'- --aCGAGaCGACGGUCGCcgCGCCGg -3'
miRNA:   3'- aaaGCUCcGUUGUCAGCGaaGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 50431 0.72 0.87322
Target:  5'- -cUCGAGGC-GCGGUCGCa-CACgCGUg -3'
miRNA:   3'- aaAGCUCCGuUGUCAGCGaaGUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.