Results 41 - 60 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15933 | 5' | -52.5 | NC_004065.1 | + | 212125 | 0.69 | 0.948767 |
Target: 5'- ---gGAGGCGACAGUCucucgacggGCguccgucCGCCGCu -3' miRNA: 3'- aaagCUCCGUUGUCAG---------CGaa-----GUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 43799 | 0.69 | 0.948767 |
Target: 5'- ---aGGGGCAGCA-UCGCUcCAUCGUg -3' miRNA: 3'- aaagCUCCGUUGUcAGCGAaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 166736 | 0.69 | 0.95291 |
Target: 5'- -cUCGAugGGCAGCGGgaGC-UCGCCGUa -3' miRNA: 3'- aaAGCU--CCGUUGUCagCGaAGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 199924 | 0.69 | 0.95291 |
Target: 5'- --cCGGGGCuGCAGcucUCGCU--ACCGCu -3' miRNA: 3'- aaaGCUCCGuUGUC---AGCGAagUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 56637 | 0.69 | 0.95644 |
Target: 5'- --gCGGuGGCAGCGGcCGCggcacccUUCACCGUc -3' miRNA: 3'- aaaGCU-CCGUUGUCaGCG-------AAGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 111724 | 0.69 | 0.956821 |
Target: 5'- ---aGGGGCAucGCcGUCGCcUUCGCCuGCg -3' miRNA: 3'- aaagCUCCGU--UGuCAGCG-AAGUGG-CG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 97184 | 0.69 | 0.956821 |
Target: 5'- cUUCGGGGCuc--GUCGUcgCGCUGCg -3' miRNA: 3'- aAAGCUCCGuuguCAGCGaaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 97665 | 0.69 | 0.958321 |
Target: 5'- gUUCGcgaucuGGCGcaggaugugauacucGCGGUCGCUgcCGCCGCc -3' miRNA: 3'- aAAGCu-----CCGU---------------UGUCAGCGAa-GUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 96843 | 0.69 | 0.960504 |
Target: 5'- uUUUCGAGaCGGCg--CGCUgUCGCCGCg -3' miRNA: 3'- -AAAGCUCcGUUGucaGCGA-AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 195106 | 0.69 | 0.960504 |
Target: 5'- ---aGGGGCGuCAGcUCGCcggcggugUCGCCGCa -3' miRNA: 3'- aaagCUCCGUuGUC-AGCGa-------AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 66126 | 0.68 | 0.963965 |
Target: 5'- --cCGAGGCGcUGGcgCGCUggGCCGCg -3' miRNA: 3'- aaaGCUCCGUuGUCa-GCGAagUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 164638 | 0.68 | 0.963965 |
Target: 5'- -cUCgGAGG-AACAGUCGggUCGCgGCg -3' miRNA: 3'- aaAG-CUCCgUUGUCAGCgaAGUGgCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 54560 | 0.68 | 0.963965 |
Target: 5'- --aUGGGGCGugcucGCAGccuccugUGCUUCGCCGUg -3' miRNA: 3'- aaaGCUCCGU-----UGUCa------GCGAAGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 94004 | 0.68 | 0.967208 |
Target: 5'- uUUUCGGGGUccCGGUUccgGCUUCGuuGCu -3' miRNA: 3'- -AAAGCUCCGuuGUCAG---CGAAGUggCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 185859 | 0.68 | 0.970239 |
Target: 5'- -gUUGAGGCGcgaGCcuUCGCUgCACCGUu -3' miRNA: 3'- aaAGCUCCGU---UGucAGCGAaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 103140 | 0.68 | 0.970239 |
Target: 5'- --cCGAGGCGuuCAGcaCGCguagCACCGCc -3' miRNA: 3'- aaaGCUCCGUu-GUCa-GCGaa--GUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 62126 | 0.68 | 0.973063 |
Target: 5'- ---gGAGGCGGCA-UCGU--CGCCGCg -3' miRNA: 3'- aaagCUCCGUUGUcAGCGaaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 103911 | 0.68 | 0.973063 |
Target: 5'- --gCGAGGCGGaGGUCGCgaCgACUGCu -3' miRNA: 3'- aaaGCUCCGUUgUCAGCGaaG-UGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 198013 | 0.68 | 0.973063 |
Target: 5'- --gCGAuGGCcucggaGGCGGUCGCggUCGCCGg -3' miRNA: 3'- aaaGCU-CCG------UUGUCAGCGa-AGUGGCg -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 217610 | 0.68 | 0.973063 |
Target: 5'- aUUCGAGGaGACGGUagcuacCGUUgaucgagagacUCGCCGCg -3' miRNA: 3'- aAAGCUCCgUUGUCA------GCGA-----------AGUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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