miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 44297 0.68 0.975689
Target:  5'- --gCGAGaGCAAgAGUCcCUUCACCa- -3'
miRNA:   3'- aaaGCUC-CGUUgUCAGcGAAGUGGcg -5'
15933 5' -52.5 NC_004065.1 + 66629 0.68 0.975689
Target:  5'- -cUCucGGCGACAucGUCgGCUUCGgCGCg -3'
miRNA:   3'- aaAGcuCCGUUGU--CAG-CGAAGUgGCG- -5'
15933 5' -52.5 NC_004065.1 + 136629 0.68 0.975689
Target:  5'- --cCGAGGCGGCGGUC-CggaGCgGCg -3'
miRNA:   3'- aaaGCUCCGUUGUCAGcGaagUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 33444 0.68 0.975689
Target:  5'- --aCGGGGCGACuGUgcUGCUUCugGCaCGCg -3'
miRNA:   3'- aaaGCUCCGUUGuCA--GCGAAG--UG-GCG- -5'
15933 5' -52.5 NC_004065.1 + 173894 0.68 0.975689
Target:  5'- --cCGAGGCuGCAGaagGCgagCGCCGCc -3'
miRNA:   3'- aaaGCUCCGuUGUCag-CGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 207507 0.68 0.978122
Target:  5'- -cUCGcGGCGcgauaGCGGUCGUcgguccuccUCGCCGCg -3'
miRNA:   3'- aaAGCuCCGU-----UGUCAGCGa--------AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 75856 0.68 0.978122
Target:  5'- --gCGAGccaGCAACAGcCGCcgcCGCCGCc -3'
miRNA:   3'- aaaGCUC---CGUUGUCaGCGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 94637 0.68 0.978122
Target:  5'- -gUCGGGcGCGGcCGG-CGCgUCACCGUc -3'
miRNA:   3'- aaAGCUC-CGUU-GUCaGCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 18072 0.68 0.978122
Target:  5'- --aCGAuGGCGGCAG-CGac-CGCCGCa -3'
miRNA:   3'- aaaGCU-CCGUUGUCaGCgaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 130074 0.68 0.978122
Target:  5'- gUUUCGcaGCAGCAGcCGC--CGCCGCg -3'
miRNA:   3'- -AAAGCucCGUUGUCaGCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 180599 0.68 0.978816
Target:  5'- --aUGAGGgGACAGUCGUcccuccgUcuccggaacgaggauUCGCCGCg -3'
miRNA:   3'- aaaGCUCCgUUGUCAGCG-------A---------------AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 229487 0.67 0.980371
Target:  5'- ---gGGGGCGcucgcACAGggggCGCgcCACCGCg -3'
miRNA:   3'- aaagCUCCGU-----UGUCa---GCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 45195 0.67 0.980371
Target:  5'- ---aGGGGCAACAcgccGcCGCUgccgcCACCGCc -3'
miRNA:   3'- aaagCUCCGUUGU----CaGCGAa----GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 152847 0.67 0.980371
Target:  5'- -aUCGAGGuCGGCAGccagaGC--CACCGCa -3'
miRNA:   3'- aaAGCUCC-GUUGUCag---CGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 184477 0.67 0.980371
Target:  5'- gUUUCuGGGCGGCuGcCGCcgcCGCCGCg -3'
miRNA:   3'- -AAAGcUCCGUUGuCaGCGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 166154 0.67 0.982443
Target:  5'- --cCGGcGGCAGCGG-CGCcgacgucgugCACCGCg -3'
miRNA:   3'- aaaGCU-CCGUUGUCaGCGaa--------GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 35693 0.67 0.982443
Target:  5'- -aUCGAGGUcgUcGUCGCUgaugauCCGCa -3'
miRNA:   3'- aaAGCUCCGuuGuCAGCGAagu---GGCG- -5'
15933 5' -52.5 NC_004065.1 + 130648 0.67 0.982443
Target:  5'- -cUCGAGucGgGACAGUCGgCgccgUCGCUGCc -3'
miRNA:   3'- aaAGCUC--CgUUGUCAGC-Ga---AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 131874 0.67 0.982443
Target:  5'- --gCGGuGGCGGCGG-CGaCUaUCACCGCc -3'
miRNA:   3'- aaaGCU-CCGUUGUCaGC-GA-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 85486 0.67 0.983978
Target:  5'- cUUCGAGGCcugagucGGC-GUgGCUuccuucuuuccggUCGCCGCg -3'
miRNA:   3'- aAAGCUCCG-------UUGuCAgCGA-------------AGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.