miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 30614 0.66 0.990432
Target:  5'- --cCGAGGCAGCGacgcguguccGUC-CUUCACC-Cg -3'
miRNA:   3'- aaaGCUCCGUUGU----------CAGcGAAGUGGcG- -5'
15933 5' -52.5 NC_004065.1 + 160189 0.66 0.989122
Target:  5'- cUUCuuGcGCAucuccucguACAGUCGCUUCAuguCCGCc -3'
miRNA:   3'- aAAGcuC-CGU---------UGUCAGCGAAGU---GGCG- -5'
15933 5' -52.5 NC_004065.1 + 88442 0.66 0.989122
Target:  5'- -gUCGcguuGGUGGCGGUCGCcUCG-CGCa -3'
miRNA:   3'- aaAGCu---CCGUUGUCAGCGaAGUgGCG- -5'
15933 5' -52.5 NC_004065.1 + 37895 0.66 0.989122
Target:  5'- --cCGucuGGCGGCcGUCGCUUguuucuuccUGCCGCg -3'
miRNA:   3'- aaaGCu--CCGUUGuCAGCGAA---------GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 36293 0.67 0.987677
Target:  5'- --cCGAGGCGAUGG-CGCcUUCGaCGCu -3'
miRNA:   3'- aaaGCUCCGUUGUCaGCG-AAGUgGCG- -5'
15933 5' -52.5 NC_004065.1 + 85647 0.67 0.987677
Target:  5'- ---gGAGGCAcCAGaUCGU--CACCGCc -3'
miRNA:   3'- aaagCUCCGUuGUC-AGCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 83000 0.67 0.987677
Target:  5'- --cCGucGGCAGucUAGUCGCUUUcuGCUGCg -3'
miRNA:   3'- aaaGCu-CCGUU--GUCAGCGAAG--UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 62082 0.67 0.986741
Target:  5'- aUUCaGGGGCGacggcagcggcagcgGCGGUCGUUaCGCuCGCg -3'
miRNA:   3'- aAAG-CUCCGU---------------UGUCAGCGAaGUG-GCG- -5'
15933 5' -52.5 NC_004065.1 + 30965 0.67 0.986087
Target:  5'- uUUUCGGGGaagacgaGugGGaugCGC-UCGCCGCg -3'
miRNA:   3'- -AAAGCUCCg------UugUCa--GCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 117459 0.67 0.986087
Target:  5'- -gUCGuccGGCuccGCGGcCGC-UCGCCGCc -3'
miRNA:   3'- aaAGCu--CCGu--UGUCaGCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 104554 0.67 0.986087
Target:  5'- --aCG-GGCAgguGCGGcCGCUgugcaCGCCGCg -3'
miRNA:   3'- aaaGCuCCGU---UGUCaGCGAa----GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 19514 0.67 0.986087
Target:  5'- -aUCGAGGCAACGGcuaCGUgUC-CUGUa -3'
miRNA:   3'- aaAGCUCCGUUGUCa--GCGaAGuGGCG- -5'
15933 5' -52.5 NC_004065.1 + 31190 0.67 0.984345
Target:  5'- -aUCG-GGCAAgAGUUGCUgguCCGUu -3'
miRNA:   3'- aaAGCuCCGUUgUCAGCGAaguGGCG- -5'
15933 5' -52.5 NC_004065.1 + 199848 0.67 0.984163
Target:  5'- cUUCGGggauguuGGUAACAGcCGCUacaUC-CCGCg -3'
miRNA:   3'- aAAGCU-------CCGUUGUCaGCGA---AGuGGCG- -5'
15933 5' -52.5 NC_004065.1 + 85486 0.67 0.983978
Target:  5'- cUUCGAGGCcugagucGGC-GUgGCUuccuucuuuccggUCGCCGCg -3'
miRNA:   3'- aAAGCUCCG-------UUGuCAgCGA-------------AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 166154 0.67 0.982443
Target:  5'- --cCGGcGGCAGCGG-CGCcgacgucgugCACCGCg -3'
miRNA:   3'- aaaGCU-CCGUUGUCaGCGaa--------GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 35693 0.67 0.982443
Target:  5'- -aUCGAGGUcgUcGUCGCUgaugauCCGCa -3'
miRNA:   3'- aaAGCUCCGuuGuCAGCGAagu---GGCG- -5'
15933 5' -52.5 NC_004065.1 + 131874 0.67 0.982443
Target:  5'- --gCGGuGGCGGCGG-CGaCUaUCACCGCc -3'
miRNA:   3'- aaaGCU-CCGUUGUCaGC-GA-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 130648 0.67 0.982443
Target:  5'- -cUCGAGucGgGACAGUCGgCgccgUCGCUGCc -3'
miRNA:   3'- aaAGCUC--CgUUGUCAGC-Ga---AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 152847 0.67 0.980371
Target:  5'- -aUCGAGGuCGGCAGccagaGC--CACCGCa -3'
miRNA:   3'- aaAGCUCC-GUUGUCag---CGaaGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.