Results 41 - 60 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15933 | 5' | -52.5 | NC_004065.1 | + | 152847 | 0.67 | 0.980371 |
Target: 5'- -aUCGAGGuCGGCAGccagaGC--CACCGCa -3' miRNA: 3'- aaAGCUCC-GUUGUCag---CGaaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 45195 | 0.67 | 0.980371 |
Target: 5'- ---aGGGGCAACAcgccGcCGCUgccgcCACCGCc -3' miRNA: 3'- aaagCUCCGUUGU----CaGCGAa----GUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 229487 | 0.67 | 0.980371 |
Target: 5'- ---gGGGGCGcucgcACAGggggCGCgcCACCGCg -3' miRNA: 3'- aaagCUCCGU-----UGUCa---GCGaaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 180599 | 0.68 | 0.978816 |
Target: 5'- --aUGAGGgGACAGUCGUcccuccgUcuccggaacgaggauUCGCCGCg -3' miRNA: 3'- aaaGCUCCgUUGUCAGCG-------A---------------AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 130074 | 0.68 | 0.978122 |
Target: 5'- gUUUCGcaGCAGCAGcCGC--CGCCGCg -3' miRNA: 3'- -AAAGCucCGUUGUCaGCGaaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 18072 | 0.68 | 0.978122 |
Target: 5'- --aCGAuGGCGGCAG-CGac-CGCCGCa -3' miRNA: 3'- aaaGCU-CCGUUGUCaGCgaaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 207507 | 0.68 | 0.978122 |
Target: 5'- -cUCGcGGCGcgauaGCGGUCGUcgguccuccUCGCCGCg -3' miRNA: 3'- aaAGCuCCGU-----UGUCAGCGa--------AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 75856 | 0.68 | 0.978122 |
Target: 5'- --gCGAGccaGCAACAGcCGCcgcCGCCGCc -3' miRNA: 3'- aaaGCUC---CGUUGUCaGCGaa-GUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 94637 | 0.68 | 0.978122 |
Target: 5'- -gUCGGGcGCGGcCGG-CGCgUCACCGUc -3' miRNA: 3'- aaAGCUC-CGUU-GUCaGCGaAGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 136629 | 0.68 | 0.975689 |
Target: 5'- --cCGAGGCGGCGGUC-CggaGCgGCg -3' miRNA: 3'- aaaGCUCCGUUGUCAGcGaagUGgCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 66629 | 0.68 | 0.975689 |
Target: 5'- -cUCucGGCGACAucGUCgGCUUCGgCGCg -3' miRNA: 3'- aaAGcuCCGUUGU--CAG-CGAAGUgGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 173894 | 0.68 | 0.975689 |
Target: 5'- --cCGAGGCuGCAGaagGCgagCGCCGCc -3' miRNA: 3'- aaaGCUCCGuUGUCag-CGaa-GUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 44297 | 0.68 | 0.975689 |
Target: 5'- --gCGAGaGCAAgAGUCcCUUCACCa- -3' miRNA: 3'- aaaGCUC-CGUUgUCAGcGAAGUGGcg -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 33444 | 0.68 | 0.975689 |
Target: 5'- --aCGGGGCGACuGUgcUGCUUCugGCaCGCg -3' miRNA: 3'- aaaGCUCCGUUGuCA--GCGAAG--UG-GCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 198013 | 0.68 | 0.973063 |
Target: 5'- --gCGAuGGCcucggaGGCGGUCGCggUCGCCGg -3' miRNA: 3'- aaaGCU-CCG------UUGUCAGCGa-AGUGGCg -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 62126 | 0.68 | 0.973063 |
Target: 5'- ---gGAGGCGGCA-UCGU--CGCCGCg -3' miRNA: 3'- aaagCUCCGUUGUcAGCGaaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 103911 | 0.68 | 0.973063 |
Target: 5'- --gCGAGGCGGaGGUCGCgaCgACUGCu -3' miRNA: 3'- aaaGCUCCGUUgUCAGCGaaG-UGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 217610 | 0.68 | 0.973063 |
Target: 5'- aUUCGAGGaGACGGUagcuacCGUUgaucgagagacUCGCCGCg -3' miRNA: 3'- aAAGCUCCgUUGUCA------GCGA-----------AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 185859 | 0.68 | 0.970239 |
Target: 5'- -gUUGAGGCGcgaGCcuUCGCUgCACCGUu -3' miRNA: 3'- aaAGCUCCGU---UGucAGCGAaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 103140 | 0.68 | 0.970239 |
Target: 5'- --cCGAGGCGuuCAGcaCGCguagCACCGCc -3' miRNA: 3'- aaaGCUCCGUu-GUCa-GCGaa--GUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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