miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 94004 0.68 0.967208
Target:  5'- uUUUCGGGGUccCGGUUccgGCUUCGuuGCu -3'
miRNA:   3'- -AAAGCUCCGuuGUCAG---CGAAGUggCG- -5'
15933 5' -52.5 NC_004065.1 + 164638 0.68 0.963965
Target:  5'- -cUCgGAGG-AACAGUCGggUCGCgGCg -3'
miRNA:   3'- aaAG-CUCCgUUGUCAGCgaAGUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 66126 0.68 0.963965
Target:  5'- --cCGAGGCGcUGGcgCGCUggGCCGCg -3'
miRNA:   3'- aaaGCUCCGUuGUCa-GCGAagUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 54560 0.68 0.963965
Target:  5'- --aUGGGGCGugcucGCAGccuccugUGCUUCGCCGUg -3'
miRNA:   3'- aaaGCUCCGU-----UGUCa------GCGAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 195106 0.69 0.960504
Target:  5'- ---aGGGGCGuCAGcUCGCcggcggugUCGCCGCa -3'
miRNA:   3'- aaagCUCCGUuGUC-AGCGa-------AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 96843 0.69 0.960504
Target:  5'- uUUUCGAGaCGGCg--CGCUgUCGCCGCg -3'
miRNA:   3'- -AAAGCUCcGUUGucaGCGA-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 97665 0.69 0.958321
Target:  5'- gUUCGcgaucuGGCGcaggaugugauacucGCGGUCGCUgcCGCCGCc -3'
miRNA:   3'- aAAGCu-----CCGU---------------UGUCAGCGAa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 97184 0.69 0.956821
Target:  5'- cUUCGGGGCuc--GUCGUcgCGCUGCg -3'
miRNA:   3'- aAAGCUCCGuuguCAGCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 111724 0.69 0.956821
Target:  5'- ---aGGGGCAucGCcGUCGCcUUCGCCuGCg -3'
miRNA:   3'- aaagCUCCGU--UGuCAGCG-AAGUGG-CG- -5'
15933 5' -52.5 NC_004065.1 + 56637 0.69 0.95644
Target:  5'- --gCGGuGGCAGCGGcCGCggcacccUUCACCGUc -3'
miRNA:   3'- aaaGCU-CCGUUGUCaGCG-------AAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 199924 0.69 0.95291
Target:  5'- --cCGGGGCuGCAGcucUCGCU--ACCGCu -3'
miRNA:   3'- aaaGCUCCGuUGUC---AGCGAagUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 166736 0.69 0.95291
Target:  5'- -cUCGAugGGCAGCGGgaGC-UCGCCGUa -3'
miRNA:   3'- aaAGCU--CCGUUGUCagCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 138041 0.69 0.948767
Target:  5'- cUUCGGGGCGguuCAGauUCGUgcacgUUGCCGCg -3'
miRNA:   3'- aAAGCUCCGUu--GUC--AGCGa----AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 212125 0.69 0.948767
Target:  5'- ---gGAGGCGACAGUCucucgacggGCguccgucCGCCGCu -3'
miRNA:   3'- aaagCUCCGUUGUCAG---------CGaa-----GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 43059 0.69 0.948767
Target:  5'- -cUCGAGGCGuCGG-CGCgacagACCGCa -3'
miRNA:   3'- aaAGCUCCGUuGUCaGCGaag--UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 43799 0.69 0.948767
Target:  5'- ---aGGGGCAGCA-UCGCUcCAUCGUg -3'
miRNA:   3'- aaagCUCCGUUGUcAGCGAaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 212792 0.69 0.94439
Target:  5'- -aUCGAGGCAGCugaggcccuuucGGaCGCUUUGgCGCu -3'
miRNA:   3'- aaAGCUCCGUUG------------UCaGCGAAGUgGCG- -5'
15933 5' -52.5 NC_004065.1 + 154169 0.69 0.94439
Target:  5'- --gCGGcGGCGGCuGUUGCUggcUCGCCGUc -3'
miRNA:   3'- aaaGCU-CCGUUGuCAGCGA---AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 169448 0.69 0.94439
Target:  5'- --cCGGGGCGccuuccGCGGUCuuucuCUUCGCCGUg -3'
miRNA:   3'- aaaGCUCCGU------UGUCAGc----GAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 96117 0.7 0.939775
Target:  5'- cUUCGAGGC---GGUCGCU---CCGCg -3'
miRNA:   3'- aAAGCUCCGuugUCAGCGAaguGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.