miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 612 1.1 0.007853
Target:  5'- gUUUCGAGGCAACAGUCGCUUCACCGCu -3'
miRNA:   3'- -AAAGCUCCGUUGUCAGCGAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 2068 0.74 0.762009
Target:  5'- --gCGAGGCAGCuccuGuUCGUUUCACgCGCu -3'
miRNA:   3'- aaaGCUCCGUUGu---C-AGCGAAGUG-GCG- -5'
15933 5' -52.5 NC_004065.1 + 16534 0.76 0.692776
Target:  5'- cUUUCGuGGCGucgACGGUCGCggCgACCGCu -3'
miRNA:   3'- -AAAGCuCCGU---UGUCAGCGaaG-UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 17421 0.71 0.894195
Target:  5'- ---gGAGGCAagaGCGGUCGUUUgGCgGCc -3'
miRNA:   3'- aaagCUCCGU---UGUCAGCGAAgUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 17931 0.72 0.858138
Target:  5'- -aUCGGGGCAgguacgauGgGGUCGCaggUCGCCGg -3'
miRNA:   3'- aaAGCUCCGU--------UgUCAGCGa--AGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 18072 0.68 0.978122
Target:  5'- --aCGAuGGCGGCAG-CGac-CGCCGCa -3'
miRNA:   3'- aaaGCU-CCGUUGUCaGCgaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 19514 0.67 0.986087
Target:  5'- -aUCGAGGCAACGGcuaCGUgUC-CUGUa -3'
miRNA:   3'- aaAGCUCCGUUGUCa--GCGaAGuGGCG- -5'
15933 5' -52.5 NC_004065.1 + 19570 0.66 0.993632
Target:  5'- -gUCGGuGGCGGCGGUaGCgUCgGCUGCg -3'
miRNA:   3'- aaAGCU-CCGUUGUCAgCGaAG-UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 20892 0.66 0.992678
Target:  5'- --gCGAaGCAACAGUCuCgUCACCGg -3'
miRNA:   3'- aaaGCUcCGUUGUCAGcGaAGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 28995 0.7 0.929824
Target:  5'- -----cGGCGGCGGUgGCgaggCGCCGCg -3'
miRNA:   3'- aaagcuCCGUUGUCAgCGaa--GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 30614 0.66 0.990432
Target:  5'- --cCGAGGCAGCGacgcguguccGUC-CUUCACC-Cg -3'
miRNA:   3'- aaaGCUCCGUUGU----------CAGcGAAGUGGcG- -5'
15933 5' -52.5 NC_004065.1 + 30965 0.67 0.986087
Target:  5'- uUUUCGGGGaagacgaGugGGaugCGC-UCGCCGCg -3'
miRNA:   3'- -AAAGCUCCg------UugUCa--GCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 31190 0.67 0.984345
Target:  5'- -aUCG-GGCAAgAGUUGCUgguCCGUu -3'
miRNA:   3'- aaAGCuCCGUUgUCAGCGAaguGGCG- -5'
15933 5' -52.5 NC_004065.1 + 33444 0.68 0.975689
Target:  5'- --aCGGGGCGACuGUgcUGCUUCugGCaCGCg -3'
miRNA:   3'- aaaGCUCCGUUGuCA--GCGAAG--UG-GCG- -5'
15933 5' -52.5 NC_004065.1 + 35693 0.67 0.982443
Target:  5'- -aUCGAGGUcgUcGUCGCUgaugauCCGCa -3'
miRNA:   3'- aaAGCUCCGuuGuCAGCGAagu---GGCG- -5'
15933 5' -52.5 NC_004065.1 + 36293 0.67 0.987677
Target:  5'- --cCGAGGCGAUGG-CGCcUUCGaCGCu -3'
miRNA:   3'- aaaGCUCCGUUGUCaGCG-AAGUgGCG- -5'
15933 5' -52.5 NC_004065.1 + 37159 0.7 0.938343
Target:  5'- -aUCGGcGGCAGCAGUgucagcaacuccgcCGCcgUCACCGa -3'
miRNA:   3'- aaAGCU-CCGUUGUCA--------------GCGa-AGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 37895 0.66 0.989122
Target:  5'- --cCGucuGGCGGCcGUCGCUUguuucuuccUGCCGCg -3'
miRNA:   3'- aaaGCu--CCGUUGuCAGCGAA---------GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 38176 0.76 0.672395
Target:  5'- -aUCGcGGCGAUAGUCGCggccgUCACCa- -3'
miRNA:   3'- aaAGCuCCGUUGUCAGCGa----AGUGGcg -5'
15933 5' -52.5 NC_004065.1 + 43059 0.69 0.948767
Target:  5'- -cUCGAGGCGuCGG-CGCgacagACCGCa -3'
miRNA:   3'- aaAGCUCCGUuGUCaGCGaag--UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.