miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 88442 0.66 0.989122
Target:  5'- -gUCGcguuGGUGGCGGUCGCcUCG-CGCa -3'
miRNA:   3'- aaAGCu---CCGUUGUCAGCGaAGUgGCG- -5'
15933 5' -52.5 NC_004065.1 + 91174 0.74 0.771509
Target:  5'- -gUCGcAGGCGACGGcCGCggaagCGCCGUc -3'
miRNA:   3'- aaAGC-UCCGUUGUCaGCGaa---GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 94004 0.68 0.967208
Target:  5'- uUUUCGGGGUccCGGUUccgGCUUCGuuGCu -3'
miRNA:   3'- -AAAGCUCCGuuGUCAG---CGAAGUggCG- -5'
15933 5' -52.5 NC_004065.1 + 94637 0.68 0.978122
Target:  5'- -gUCGGGcGCGGcCGG-CGCgUCACCGUc -3'
miRNA:   3'- aaAGCUC-CGUU-GUCaGCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 94721 0.66 0.992577
Target:  5'- -cUCGAgcgggccgaagucGGCGGCGGagacgCGUUUCAgCGCg -3'
miRNA:   3'- aaAGCU-------------CCGUUGUCa----GCGAAGUgGCG- -5'
15933 5' -52.5 NC_004065.1 + 96117 0.7 0.939775
Target:  5'- cUUCGAGGC---GGUCGCU---CCGCg -3'
miRNA:   3'- aAAGCUCCGuugUCAGCGAaguGGCG- -5'
15933 5' -52.5 NC_004065.1 + 96843 0.69 0.960504
Target:  5'- uUUUCGAGaCGGCg--CGCUgUCGCCGCg -3'
miRNA:   3'- -AAAGCUCcGUUGucaGCGA-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 97184 0.69 0.956821
Target:  5'- cUUCGGGGCuc--GUCGUcgCGCUGCg -3'
miRNA:   3'- aAAGCUCCGuuguCAGCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 97665 0.69 0.958321
Target:  5'- gUUCGcgaucuGGCGcaggaugugauacucGCGGUCGCUgcCGCCGCc -3'
miRNA:   3'- aAAGCu-----CCGU---------------UGUCAGCGAa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 98130 0.66 0.993541
Target:  5'- -cUCGAaccaggcGGCGGCGGUgCGCaUCGCgUGCa -3'
miRNA:   3'- aaAGCU-------CCGUUGUCA-GCGaAGUG-GCG- -5'
15933 5' -52.5 NC_004065.1 + 98147 0.66 0.992678
Target:  5'- --cUGGcGGUGAUAGUCGC--CGCCGCc -3'
miRNA:   3'- aaaGCU-CCGUUGUCAGCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 101423 0.66 0.992678
Target:  5'- -gUgGGGGCGgcuggcgcguGCGGaugCGcCUUCGCCGCc -3'
miRNA:   3'- aaAgCUCCGU----------UGUCa--GC-GAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 101852 0.7 0.93492
Target:  5'- ---gGGGGCGuCGGgggCGCUaUCGCCGCc -3'
miRNA:   3'- aaagCUCCGUuGUCa--GCGA-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 103140 0.68 0.970239
Target:  5'- --cCGAGGCGuuCAGcaCGCguagCACCGCc -3'
miRNA:   3'- aaaGCUCCGUu-GUCa-GCGaa--GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 103294 0.73 0.798314
Target:  5'- cUUCGAGGCccgcggcGGCAGgcucaGCggUCGCCGCa -3'
miRNA:   3'- aAAGCUCCG-------UUGUCag---CGa-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 103911 0.68 0.973063
Target:  5'- --gCGAGGCGGaGGUCGCgaCgACUGCu -3'
miRNA:   3'- aaaGCUCCGUUgUCAGCGaaG-UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 104554 0.67 0.986087
Target:  5'- --aCG-GGCAgguGCGGcCGCUgugcaCGCCGCg -3'
miRNA:   3'- aaaGCuCCGU---UGUCaGCGAa----GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 111724 0.69 0.956821
Target:  5'- ---aGGGGCAucGCcGUCGCcUUCGCCuGCg -3'
miRNA:   3'- aaagCUCCGU--UGuCAGCG-AAGUGG-CG- -5'
15933 5' -52.5 NC_004065.1 + 111846 0.66 0.993632
Target:  5'- --cCGAacGGCGGCAGcCGUgacggcCGCCGCc -3'
miRNA:   3'- aaaGCU--CCGUUGUCaGCGaa----GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 113584 0.71 0.900728
Target:  5'- aUUCGu-GCGACGGgCGCUaCACCGCc -3'
miRNA:   3'- aAAGCucCGUUGUCaGCGAaGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.