miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 115995 0.71 0.907026
Target:  5'- --cUGAGGCGACAGagGCgcu-CCGCg -3'
miRNA:   3'- aaaGCUCCGUUGUCagCGaaguGGCG- -5'
15933 5' -52.5 NC_004065.1 + 116830 0.66 0.992678
Target:  5'- -gUCGGGGCAGCcgcuGUCGUccaugCGCCu- -3'
miRNA:   3'- aaAGCUCCGUUGu---CAGCGaa---GUGGcg -5'
15933 5' -52.5 NC_004065.1 + 117459 0.67 0.986087
Target:  5'- -gUCGuccGGCuccGCGGcCGC-UCGCCGCc -3'
miRNA:   3'- aaAGCu--CCGu--UGUCaGCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 119831 0.74 0.780883
Target:  5'- -cUCGAcgggcGGCGGCGcGUCGCggcCGCCGCa -3'
miRNA:   3'- aaAGCU-----CCGUUGU-CAGCGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 122227 0.66 0.990432
Target:  5'- -cUCGAgcgGGcCGGCgGGUCGUUccugUCGCCGCu -3'
miRNA:   3'- aaAGCU---CC-GUUG-UCAGCGA----AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 128410 0.66 0.991614
Target:  5'- --cCGAgcGGCAGCGG-CgGCggCGCCGCc -3'
miRNA:   3'- aaaGCU--CCGUUGUCaG-CGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 130074 0.68 0.978122
Target:  5'- gUUUCGcaGCAGCAGcCGC--CGCCGCg -3'
miRNA:   3'- -AAAGCucCGUUGUCaGCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 130648 0.67 0.982443
Target:  5'- -cUCGAGucGgGACAGUCGgCgccgUCGCUGCc -3'
miRNA:   3'- aaAGCUC--CgUUGUCAGC-Ga---AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 131874 0.67 0.982443
Target:  5'- --gCGGuGGCGGCGG-CGaCUaUCACCGCc -3'
miRNA:   3'- aaaGCU-CCGUUGUCaGC-GA-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 136629 0.68 0.975689
Target:  5'- --cCGAGGCGGCGGUC-CggaGCgGCg -3'
miRNA:   3'- aaaGCUCCGUUGUCAGcGaagUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 138041 0.69 0.948767
Target:  5'- cUUCGGGGCGguuCAGauUCGUgcacgUUGCCGCg -3'
miRNA:   3'- aAAGCUCCGUu--GUC--AGCGa----AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 146734 0.82 0.350144
Target:  5'- --aCGAGGCAGCGGUCGgc-CGCCGCg -3'
miRNA:   3'- aaaGCUCCGUUGUCAGCgaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 151735 0.66 0.993632
Target:  5'- --cCGAGGCccucGAgAGcCGCUacgacCACCGCa -3'
miRNA:   3'- aaaGCUCCG----UUgUCaGCGAa----GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 152847 0.67 0.980371
Target:  5'- -aUCGAGGuCGGCAGccagaGC--CACCGCa -3'
miRNA:   3'- aaAGCUCC-GUUGUCag---CGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 154169 0.69 0.94439
Target:  5'- --gCGGcGGCGGCuGUUGCUggcUCGCCGUc -3'
miRNA:   3'- aaaGCU-CCGUUGuCAGCGA---AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 157130 0.71 0.913086
Target:  5'- ---gGGGGCAuCA-UCGCgUUCACCGCg -3'
miRNA:   3'- aaagCUCCGUuGUcAGCG-AAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 160189 0.66 0.989122
Target:  5'- cUUCuuGcGCAucuccucguACAGUCGCUUCAuguCCGCc -3'
miRNA:   3'- aAAGcuC-CGU---------UGUCAGCGAAGU---GGCG- -5'
15933 5' -52.5 NC_004065.1 + 161848 0.71 0.900728
Target:  5'- --gCGGGGcCGACAgcuccGUCGCgcgCGCCGCc -3'
miRNA:   3'- aaaGCUCC-GUUGU-----CAGCGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 162281 0.73 0.837304
Target:  5'- aUUUCG-GGCGguugcucgugaacgaGCGGUCGCUcgUCACgGCg -3'
miRNA:   3'- -AAAGCuCCGU---------------UGUCAGCGA--AGUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 164556 0.66 0.993632
Target:  5'- -gUCGAgccGGCGGCGG-CGCcg-ACCGCu -3'
miRNA:   3'- aaAGCU---CCGUUGUCaGCGaagUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.