miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 229487 0.67 0.980371
Target:  5'- ---gGGGGCGcucgcACAGggggCGCgcCACCGCg -3'
miRNA:   3'- aaagCUCCGU-----UGUCa---GCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 229450 0.74 0.771509
Target:  5'- -cUCGAGG-AACGcUCGCUUCACgGCu -3'
miRNA:   3'- aaAGCUCCgUUGUcAGCGAAGUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 217610 0.68 0.973063
Target:  5'- aUUCGAGGaGACGGUagcuacCGUUgaucgagagacUCGCCGCg -3'
miRNA:   3'- aAAGCUCCgUUGUCA------GCGA-----------AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 212792 0.69 0.94439
Target:  5'- -aUCGAGGCAGCugaggcccuuucGGaCGCUUUGgCGCu -3'
miRNA:   3'- aaAGCUCCGUUG------------UCaGCGAAGUgGCG- -5'
15933 5' -52.5 NC_004065.1 + 212125 0.69 0.948767
Target:  5'- ---gGAGGCGACAGUCucucgacggGCguccgucCGCCGCu -3'
miRNA:   3'- aaagCUCCGUUGUCAG---------CGaa-----GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 211947 0.77 0.621013
Target:  5'- --aCGAGGCugcgGCGGUCGCU--GCCGCc -3'
miRNA:   3'- aaaGCUCCGu---UGUCAGCGAagUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 209714 0.75 0.72294
Target:  5'- ---aGAGGCuGCGGUCGuCUUCACCa- -3'
miRNA:   3'- aaagCUCCGuUGUCAGC-GAAGUGGcg -5'
15933 5' -52.5 NC_004065.1 + 208336 0.66 0.990432
Target:  5'- ---aGAGGgAucGCGGUCGCguaUCugACCGCg -3'
miRNA:   3'- aaagCUCCgU--UGUCAGCGa--AG--UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 207507 0.68 0.978122
Target:  5'- -cUCGcGGCGcgauaGCGGUCGUcgguccuccUCGCCGCg -3'
miRNA:   3'- aaAGCuCCGU-----UGUCAGCGa--------AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 205169 0.72 0.85345
Target:  5'- -gUCGAGGCcGCcGUCGCcgccaacaucgggCGCCGCg -3'
miRNA:   3'- aaAGCUCCGuUGuCAGCGaa-----------GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 201146 0.66 0.991614
Target:  5'- -cUCGGGGCGccaGCAGUC-CUcgUCACgcaGCa -3'
miRNA:   3'- aaAGCUCCGU---UGUCAGcGA--AGUGg--CG- -5'
15933 5' -52.5 NC_004065.1 + 200752 0.71 0.887429
Target:  5'- --aCGAGGCGGCucacgcgucGGUCGCUcucUCGUCGCg -3'
miRNA:   3'- aaaGCUCCGUUG---------UCAGCGA---AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 200648 0.71 0.887429
Target:  5'- -cUCGAGGCGAgauCGG-CGUUUUAUCGCc -3'
miRNA:   3'- aaAGCUCCGUU---GUCaGCGAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 199924 0.69 0.95291
Target:  5'- --cCGGGGCuGCAGcucUCGCU--ACCGCu -3'
miRNA:   3'- aaaGCUCCGuUGUC---AGCGAagUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 199848 0.67 0.984163
Target:  5'- cUUCGGggauguuGGUAACAGcCGCUacaUC-CCGCg -3'
miRNA:   3'- aAAGCU-------CCGUUGUCaGCGA---AGuGGCG- -5'
15933 5' -52.5 NC_004065.1 + 198013 0.68 0.973063
Target:  5'- --gCGAuGGCcucggaGGCGGUCGCggUCGCCGg -3'
miRNA:   3'- aaaGCU-CCG------UUGUCAGCGa-AGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 197051 0.66 0.992678
Target:  5'- --gCGAGGCcuCcGUCauGCUcCGCCGCg -3'
miRNA:   3'- aaaGCUCCGuuGuCAG--CGAaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 196808 0.7 0.929824
Target:  5'- --aCGAGGCggUggggGGUCGUggUCACCuGCg -3'
miRNA:   3'- aaaGCUCCGuuG----UCAGCGa-AGUGG-CG- -5'
15933 5' -52.5 NC_004065.1 + 196713 0.7 0.918907
Target:  5'- cUUCGAGGagaauuACGuUCGCgUCGCCGCc -3'
miRNA:   3'- aAAGCUCCgu----UGUcAGCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 195106 0.69 0.960504
Target:  5'- ---aGGGGCGuCAGcUCGCcggcggugUCGCCGCa -3'
miRNA:   3'- aaagCUCCGUuGUC-AGCGa-------AGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.