miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 191842 0.75 0.732849
Target:  5'- -gUCGuGGUGACGGcCGCgacuaUCGCCGCg -3'
miRNA:   3'- aaAGCuCCGUUGUCaGCGa----AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 185859 0.68 0.970239
Target:  5'- -gUUGAGGCGcgaGCcuUCGCUgCACCGUu -3'
miRNA:   3'- aaAGCUCCGU---UGucAGCGAaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 184902 0.71 0.907026
Target:  5'- --aCGAGucCGACgAGUCGcCUUCGCCGCc -3'
miRNA:   3'- aaaGCUCc-GUUG-UCAGC-GAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 184477 0.67 0.980371
Target:  5'- gUUUCuGGGCGGCuGcCGCcgcCGCCGCg -3'
miRNA:   3'- -AAAGcUCCGUUGuCaGCGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 180599 0.68 0.978816
Target:  5'- --aUGAGGgGACAGUCGUcccuccgUcuccggaacgaggauUCGCCGCg -3'
miRNA:   3'- aaaGCUCCgUUGUCAGCG-------A---------------AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 174482 0.66 0.993632
Target:  5'- --cCGGGGC-ACGGUaacaucaaGUUccUCGCCGCa -3'
miRNA:   3'- aaaGCUCCGuUGUCAg-------CGA--AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 173894 0.68 0.975689
Target:  5'- --cCGAGGCuGCAGaagGCgagCGCCGCc -3'
miRNA:   3'- aaaGCUCCGuUGUCag-CGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 170300 0.73 0.816939
Target:  5'- ---aGAGuccGCGACGGUCGCcgugCGCCGCg -3'
miRNA:   3'- aaagCUC---CGUUGUCAGCGaa--GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 169448 0.69 0.94439
Target:  5'- --cCGGGGCGccuuccGCGGUCuuucuCUUCGCCGUg -3'
miRNA:   3'- aaaGCUCCGU------UGUCAGc----GAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 167351 0.66 0.990432
Target:  5'- --aCGcGGCGGCAGacaGggUCGCCGCu -3'
miRNA:   3'- aaaGCuCCGUUGUCag-CgaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 167155 0.66 0.993632
Target:  5'- ---gGAGGcCAGCAGacCGCcacCACCGCu -3'
miRNA:   3'- aaagCUCC-GUUGUCa-GCGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 166736 0.69 0.95291
Target:  5'- -cUCGAugGGCAGCGGgaGC-UCGCCGUa -3'
miRNA:   3'- aaAGCU--CCGUUGUCagCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 166154 0.67 0.982443
Target:  5'- --cCGGcGGCAGCGG-CGCcgacgucgugCACCGCg -3'
miRNA:   3'- aaaGCU-CCGUUGUCaGCGaa--------GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 164638 0.68 0.963965
Target:  5'- -cUCgGAGG-AACAGUCGggUCGCgGCg -3'
miRNA:   3'- aaAG-CUCCgUUGUCAGCgaAGUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 164556 0.66 0.993632
Target:  5'- -gUCGAgccGGCGGCGG-CGCcg-ACCGCu -3'
miRNA:   3'- aaAGCU---CCGUUGUCaGCGaagUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 162281 0.73 0.837304
Target:  5'- aUUUCG-GGCGguugcucgugaacgaGCGGUCGCUcgUCACgGCg -3'
miRNA:   3'- -AAAGCuCCGU---------------UGUCAGCGA--AGUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 161848 0.71 0.900728
Target:  5'- --gCGGGGcCGACAgcuccGUCGCgcgCGCCGCc -3'
miRNA:   3'- aaaGCUCC-GUUGU-----CAGCGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 160189 0.66 0.989122
Target:  5'- cUUCuuGcGCAucuccucguACAGUCGCUUCAuguCCGCc -3'
miRNA:   3'- aAAGcuC-CGU---------UGUCAGCGAAGU---GGCG- -5'
15933 5' -52.5 NC_004065.1 + 157130 0.71 0.913086
Target:  5'- ---gGGGGCAuCA-UCGCgUUCACCGCg -3'
miRNA:   3'- aaagCUCCGUuGUcAGCG-AAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 154169 0.69 0.94439
Target:  5'- --gCGGcGGCGGCuGUUGCUggcUCGCCGUc -3'
miRNA:   3'- aaaGCU-CCGUUGuCAGCGA---AGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.