Results 41 - 60 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15933 | 5' | -52.5 | NC_004065.1 | + | 152847 | 0.67 | 0.980371 |
Target: 5'- -aUCGAGGuCGGCAGccagaGC--CACCGCa -3' miRNA: 3'- aaAGCUCC-GUUGUCag---CGaaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 151735 | 0.66 | 0.993632 |
Target: 5'- --cCGAGGCccucGAgAGcCGCUacgacCACCGCa -3' miRNA: 3'- aaaGCUCCG----UUgUCaGCGAa----GUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 146734 | 0.82 | 0.350144 |
Target: 5'- --aCGAGGCAGCGGUCGgc-CGCCGCg -3' miRNA: 3'- aaaGCUCCGUUGUCAGCgaaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 138041 | 0.69 | 0.948767 |
Target: 5'- cUUCGGGGCGguuCAGauUCGUgcacgUUGCCGCg -3' miRNA: 3'- aAAGCUCCGUu--GUC--AGCGa----AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 136629 | 0.68 | 0.975689 |
Target: 5'- --cCGAGGCGGCGGUC-CggaGCgGCg -3' miRNA: 3'- aaaGCUCCGUUGUCAGcGaagUGgCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 131874 | 0.67 | 0.982443 |
Target: 5'- --gCGGuGGCGGCGG-CGaCUaUCACCGCc -3' miRNA: 3'- aaaGCU-CCGUUGUCaGC-GA-AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 130648 | 0.67 | 0.982443 |
Target: 5'- -cUCGAGucGgGACAGUCGgCgccgUCGCUGCc -3' miRNA: 3'- aaAGCUC--CgUUGUCAGC-Ga---AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 130074 | 0.68 | 0.978122 |
Target: 5'- gUUUCGcaGCAGCAGcCGC--CGCCGCg -3' miRNA: 3'- -AAAGCucCGUUGUCaGCGaaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 128410 | 0.66 | 0.991614 |
Target: 5'- --cCGAgcGGCAGCGG-CgGCggCGCCGCc -3' miRNA: 3'- aaaGCU--CCGUUGUCaG-CGaaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 122227 | 0.66 | 0.990432 |
Target: 5'- -cUCGAgcgGGcCGGCgGGUCGUUccugUCGCCGCu -3' miRNA: 3'- aaAGCU---CC-GUUG-UCAGCGA----AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 119831 | 0.74 | 0.780883 |
Target: 5'- -cUCGAcgggcGGCGGCGcGUCGCggcCGCCGCa -3' miRNA: 3'- aaAGCU-----CCGUUGU-CAGCGaa-GUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 117459 | 0.67 | 0.986087 |
Target: 5'- -gUCGuccGGCuccGCGGcCGC-UCGCCGCc -3' miRNA: 3'- aaAGCu--CCGu--UGUCaGCGaAGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 116830 | 0.66 | 0.992678 |
Target: 5'- -gUCGGGGCAGCcgcuGUCGUccaugCGCCu- -3' miRNA: 3'- aaAGCUCCGUUGu---CAGCGaa---GUGGcg -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 115995 | 0.71 | 0.907026 |
Target: 5'- --cUGAGGCGACAGagGCgcu-CCGCg -3' miRNA: 3'- aaaGCUCCGUUGUCagCGaaguGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 113584 | 0.71 | 0.900728 |
Target: 5'- aUUCGu-GCGACGGgCGCUaCACCGCc -3' miRNA: 3'- aAAGCucCGUUGUCaGCGAaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 111846 | 0.66 | 0.993632 |
Target: 5'- --cCGAacGGCGGCAGcCGUgacggcCGCCGCc -3' miRNA: 3'- aaaGCU--CCGUUGUCaGCGaa----GUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 111724 | 0.69 | 0.956821 |
Target: 5'- ---aGGGGCAucGCcGUCGCcUUCGCCuGCg -3' miRNA: 3'- aaagCUCCGU--UGuCAGCG-AAGUGG-CG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 104554 | 0.67 | 0.986087 |
Target: 5'- --aCG-GGCAgguGCGGcCGCUgugcaCGCCGCg -3' miRNA: 3'- aaaGCuCCGU---UGUCaGCGAa----GUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 103911 | 0.68 | 0.973063 |
Target: 5'- --gCGAGGCGGaGGUCGCgaCgACUGCu -3' miRNA: 3'- aaaGCUCCGUUgUCAGCGaaG-UGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 103294 | 0.73 | 0.798314 |
Target: 5'- cUUCGAGGCccgcggcGGCAGgcucaGCggUCGCCGCa -3' miRNA: 3'- aAAGCUCCG-------UUGUCag---CGa-AGUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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