miRNA display CGI


Results 81 - 100 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 66629 0.68 0.975689
Target:  5'- -cUCucGGCGACAucGUCgGCUUCGgCGCg -3'
miRNA:   3'- aaAGcuCCGUUGU--CAG-CGAAGUgGCG- -5'
15933 5' -52.5 NC_004065.1 + 66126 0.68 0.963965
Target:  5'- --cCGAGGCGcUGGcgCGCUggGCCGCg -3'
miRNA:   3'- aaaGCUCCGUuGUCa-GCGAagUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 63053 0.73 0.816939
Target:  5'- -cUgGGGGCGgcGCAGUCGCaggagUCGCCGg -3'
miRNA:   3'- aaAgCUCCGU--UGUCAGCGa----AGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 62126 0.68 0.973063
Target:  5'- ---gGAGGCGGCA-UCGU--CGCCGCg -3'
miRNA:   3'- aaagCUCCGUUGUcAGCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 62082 0.67 0.986741
Target:  5'- aUUCaGGGGCGacggcagcggcagcgGCGGUCGUUaCGCuCGCg -3'
miRNA:   3'- aAAG-CUCCGU---------------UGUCAGCGAaGUG-GCG- -5'
15933 5' -52.5 NC_004065.1 + 61407 0.66 0.993632
Target:  5'- --cCGcGGCAccagcgccaGCAGcCGCUUCugccuCCGCa -3'
miRNA:   3'- aaaGCuCCGU---------UGUCaGCGAAGu----GGCG- -5'
15933 5' -52.5 NC_004065.1 + 61377 0.72 0.87322
Target:  5'- --aCGAGaCGACGGUCGCcgCGCCGg -3'
miRNA:   3'- aaaGCUCcGUUGUCAGCGaaGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 56637 0.69 0.95644
Target:  5'- --gCGGuGGCAGCGGcCGCggcacccUUCACCGUc -3'
miRNA:   3'- aaaGCU-CCGUUGUCaGCG-------AAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 54560 0.68 0.963965
Target:  5'- --aUGGGGCGugcucGCAGccuccugUGCUUCGCCGUg -3'
miRNA:   3'- aaaGCUCCGU-----UGUCa------GCGAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 50431 0.72 0.87322
Target:  5'- -cUCGAGGC-GCGGUCGCa-CACgCGUg -3'
miRNA:   3'- aaAGCUCCGuUGUCAGCGaaGUG-GCG- -5'
15933 5' -52.5 NC_004065.1 + 48467 0.71 0.894195
Target:  5'- ---gGAGGUGACGGUgcCGUagUCGCCGCg -3'
miRNA:   3'- aaagCUCCGUUGUCA--GCGa-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 45195 0.67 0.980371
Target:  5'- ---aGGGGCAACAcgccGcCGCUgccgcCACCGCc -3'
miRNA:   3'- aaagCUCCGUUGU----CaGCGAa----GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 44297 0.68 0.975689
Target:  5'- --gCGAGaGCAAgAGUCcCUUCACCa- -3'
miRNA:   3'- aaaGCUC-CGUUgUCAGcGAAGUGGcg -5'
15933 5' -52.5 NC_004065.1 + 43799 0.69 0.948767
Target:  5'- ---aGGGGCAGCA-UCGCUcCAUCGUg -3'
miRNA:   3'- aaagCUCCGUUGUcAGCGAaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 43059 0.69 0.948767
Target:  5'- -cUCGAGGCGuCGG-CGCgacagACCGCa -3'
miRNA:   3'- aaAGCUCCGUuGUCaGCGaag--UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 38176 0.76 0.672395
Target:  5'- -aUCGcGGCGAUAGUCGCggccgUCACCa- -3'
miRNA:   3'- aaAGCuCCGUUGUCAGCGa----AGUGGcg -5'
15933 5' -52.5 NC_004065.1 + 37895 0.66 0.989122
Target:  5'- --cCGucuGGCGGCcGUCGCUUguuucuuccUGCCGCg -3'
miRNA:   3'- aaaGCu--CCGUUGuCAGCGAA---------GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 37159 0.7 0.938343
Target:  5'- -aUCGGcGGCAGCAGUgucagcaacuccgcCGCcgUCACCGa -3'
miRNA:   3'- aaAGCU-CCGUUGUCA--------------GCGa-AGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 36293 0.67 0.987677
Target:  5'- --cCGAGGCGAUGG-CGCcUUCGaCGCu -3'
miRNA:   3'- aaaGCUCCGUUGUCaGCG-AAGUgGCG- -5'
15933 5' -52.5 NC_004065.1 + 35693 0.67 0.982443
Target:  5'- -aUCGAGGUcgUcGUCGCUgaugauCCGCa -3'
miRNA:   3'- aaAGCUCCGuuGuCAGCGAagu---GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.