miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 166736 0.69 0.95291
Target:  5'- -cUCGAugGGCAGCGGgaGC-UCGCCGUa -3'
miRNA:   3'- aaAGCU--CCGUUGUCagCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 17421 0.71 0.894195
Target:  5'- ---gGAGGCAagaGCGGUCGUUUgGCgGCc -3'
miRNA:   3'- aaagCUCCGU---UGUCAGCGAAgUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 48467 0.71 0.894195
Target:  5'- ---gGAGGUGACGGUgcCGUagUCGCCGCg -3'
miRNA:   3'- aaagCUCCGUUGUCA--GCGa-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 196808 0.7 0.929824
Target:  5'- --aCGAGGCggUggggGGUCGUggUCACCuGCg -3'
miRNA:   3'- aaaGCUCCGuuG----UCAGCGa-AGUGG-CG- -5'
15933 5' -52.5 NC_004065.1 + 101852 0.7 0.93492
Target:  5'- ---gGGGGCGuCGGgggCGCUaUCGCCGCc -3'
miRNA:   3'- aaagCUCCGUuGUCa--GCGA-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 37159 0.7 0.938343
Target:  5'- -aUCGGcGGCAGCAGUgucagcaacuccgcCGCcgUCACCGa -3'
miRNA:   3'- aaAGCU-CCGUUGUCA--------------GCGa-AGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 154169 0.69 0.94439
Target:  5'- --gCGGcGGCGGCuGUUGCUggcUCGCCGUc -3'
miRNA:   3'- aaaGCU-CCGUUGuCAGCGA---AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 169448 0.69 0.94439
Target:  5'- --cCGGGGCGccuuccGCGGUCuuucuCUUCGCCGUg -3'
miRNA:   3'- aaaGCUCCGU------UGUCAGc----GAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 43059 0.69 0.948767
Target:  5'- -cUCGAGGCGuCGG-CGCgacagACCGCa -3'
miRNA:   3'- aaAGCUCCGUuGUCaGCGaag--UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 200752 0.71 0.887429
Target:  5'- --aCGAGGCGGCucacgcgucGGUCGCUcucUCGUCGCg -3'
miRNA:   3'- aaaGCUCCGUUG---------UCAGCGA---AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 200648 0.71 0.887429
Target:  5'- -cUCGAGGCGAgauCGG-CGUUUUAUCGCc -3'
miRNA:   3'- aaAGCUCCGUU---GUCaGCGAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 50431 0.72 0.87322
Target:  5'- -cUCGAGGC-GCGGUCGCa-CACgCGUg -3'
miRNA:   3'- aaAGCUCCGuUGUCAGCGaaGUG-GCG- -5'
15933 5' -52.5 NC_004065.1 + 209714 0.75 0.72294
Target:  5'- ---aGAGGCuGCGGUCGuCUUCACCa- -3'
miRNA:   3'- aaagCUCCGuUGUCAGC-GAAGUGGcg -5'
15933 5' -52.5 NC_004065.1 + 191842 0.75 0.732849
Target:  5'- -gUCGuGGUGACGGcCGCgacuaUCGCCGCg -3'
miRNA:   3'- aaAGCuCCGUUGUCaGCGa----AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 2068 0.74 0.762009
Target:  5'- --gCGAGGCAGCuccuGuUCGUUUCACgCGCu -3'
miRNA:   3'- aaaGCUCCGUUGu---C-AGCGAAGUG-GCG- -5'
15933 5' -52.5 NC_004065.1 + 91174 0.74 0.771509
Target:  5'- -gUCGcAGGCGACGGcCGCggaagCGCCGUc -3'
miRNA:   3'- aaAGC-UCCGUUGUCaGCGaa---GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 103294 0.73 0.798314
Target:  5'- cUUCGAGGCccgcggcGGCAGgcucaGCggUCGCCGCa -3'
miRNA:   3'- aAAGCUCCG-------UUGUCag---CGa-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 67465 0.73 0.808158
Target:  5'- --cCGAGGCGGCGGUguacgugugcgaCGaCUUCACCGa -3'
miRNA:   3'- aaaGCUCCGUUGUCA------------GC-GAAGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 162281 0.73 0.837304
Target:  5'- aUUUCG-GGCGguugcucgugaacgaGCGGUCGCUcgUCACgGCg -3'
miRNA:   3'- -AAAGCuCCGU---------------UGUCAGCGA--AGUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 17931 0.72 0.858138
Target:  5'- -aUCGGGGCAgguacgauGgGGUCGCaggUCGCCGg -3'
miRNA:   3'- aaAGCUCCGU--------UgUCAGCGa--AGUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.