Results 21 - 40 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15933 | 5' | -52.5 | NC_004065.1 | + | 166736 | 0.69 | 0.95291 |
Target: 5'- -cUCGAugGGCAGCGGgaGC-UCGCCGUa -3' miRNA: 3'- aaAGCU--CCGUUGUCagCGaAGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 43059 | 0.69 | 0.948767 |
Target: 5'- -cUCGAGGCGuCGG-CGCgacagACCGCa -3' miRNA: 3'- aaAGCUCCGUuGUCaGCGaag--UGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 17931 | 0.72 | 0.858138 |
Target: 5'- -aUCGGGGCAgguacgauGgGGUCGCaggUCGCCGg -3' miRNA: 3'- aaAGCUCCGU--------UgUCAGCGa--AGUGGCg -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 162281 | 0.73 | 0.837304 |
Target: 5'- aUUUCG-GGCGguugcucgugaacgaGCGGUCGCUcgUCACgGCg -3' miRNA: 3'- -AAAGCuCCGU---------------UGUCAGCGA--AGUGgCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 67465 | 0.73 | 0.808158 |
Target: 5'- --cCGAGGCGGCGGUguacgugugcgaCGaCUUCACCGa -3' miRNA: 3'- aaaGCUCCGUUGUCA------------GC-GAAGUGGCg -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 103294 | 0.73 | 0.798314 |
Target: 5'- cUUCGAGGCccgcggcGGCAGgcucaGCggUCGCCGCa -3' miRNA: 3'- aAAGCUCCG-------UUGUCag---CGa-AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 91174 | 0.74 | 0.771509 |
Target: 5'- -gUCGcAGGCGACGGcCGCggaagCGCCGUc -3' miRNA: 3'- aaAGC-UCCGUUGUCaGCGaa---GUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 2068 | 0.74 | 0.762009 |
Target: 5'- --gCGAGGCAGCuccuGuUCGUUUCACgCGCu -3' miRNA: 3'- aaaGCUCCGUUGu---C-AGCGAAGUG-GCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 191842 | 0.75 | 0.732849 |
Target: 5'- -gUCGuGGUGACGGcCGCgacuaUCGCCGCg -3' miRNA: 3'- aaAGCuCCGUUGUCaGCGa----AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 209714 | 0.75 | 0.72294 |
Target: 5'- ---aGAGGCuGCGGUCGuCUUCACCa- -3' miRNA: 3'- aaagCUCCGuUGUCAGC-GAAGUGGcg -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 50431 | 0.72 | 0.87322 |
Target: 5'- -cUCGAGGC-GCGGUCGCa-CACgCGUg -3' miRNA: 3'- aaAGCUCCGuUGUCAGCGaaGUG-GCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 200648 | 0.71 | 0.887429 |
Target: 5'- -cUCGAGGCGAgauCGG-CGUUUUAUCGCc -3' miRNA: 3'- aaAGCUCCGUU---GUCaGCGAAGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 169448 | 0.69 | 0.94439 |
Target: 5'- --cCGGGGCGccuuccGCGGUCuuucuCUUCGCCGUg -3' miRNA: 3'- aaaGCUCCGU------UGUCAGc----GAAGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 154169 | 0.69 | 0.94439 |
Target: 5'- --gCGGcGGCGGCuGUUGCUggcUCGCCGUc -3' miRNA: 3'- aaaGCU-CCGUUGuCAGCGA---AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 37159 | 0.7 | 0.938343 |
Target: 5'- -aUCGGcGGCAGCAGUgucagcaacuccgcCGCcgUCACCGa -3' miRNA: 3'- aaAGCU-CCGUUGUCA--------------GCGa-AGUGGCg -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 101852 | 0.7 | 0.93492 |
Target: 5'- ---gGGGGCGuCGGgggCGCUaUCGCCGCc -3' miRNA: 3'- aaagCUCCGUuGUCa--GCGA-AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 196808 | 0.7 | 0.929824 |
Target: 5'- --aCGAGGCggUggggGGUCGUggUCACCuGCg -3' miRNA: 3'- aaaGCUCCGuuG----UCAGCGa-AGUGG-CG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 48467 | 0.71 | 0.894195 |
Target: 5'- ---gGAGGUGACGGUgcCGUagUCGCCGCg -3' miRNA: 3'- aaagCUCCGUUGUCA--GCGa-AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 17421 | 0.71 | 0.894195 |
Target: 5'- ---gGAGGCAagaGCGGUCGUUUgGCgGCc -3' miRNA: 3'- aaagCUCCGU---UGUCAGCGAAgUGgCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 200752 | 0.71 | 0.887429 |
Target: 5'- --aCGAGGCGGCucacgcgucGGUCGCUcucUCGUCGCg -3' miRNA: 3'- aaaGCUCCGUUG---------UCAGCGA---AGUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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