miRNA display CGI


Results 41 - 60 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 191842 0.75 0.732849
Target:  5'- -gUCGuGGUGACGGcCGCgacuaUCGCCGCg -3'
miRNA:   3'- aaAGCuCCGUUGUCaGCGa----AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 209714 0.75 0.72294
Target:  5'- ---aGAGGCuGCGGUCGuCUUCACCa- -3'
miRNA:   3'- aaagCUCCGuUGUCAGC-GAAGUGGcg -5'
15933 5' -52.5 NC_004065.1 + 612 1.1 0.007853
Target:  5'- gUUUCGAGGCAACAGUCGCUUCACCGCu -3'
miRNA:   3'- -AAAGCUCCGUUGUCAGCGAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 48467 0.71 0.894195
Target:  5'- ---gGAGGUGACGGUgcCGUagUCGCCGCg -3'
miRNA:   3'- aaagCUCCGUUGUCA--GCGa-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 196808 0.7 0.929824
Target:  5'- --aCGAGGCggUggggGGUCGUggUCACCuGCg -3'
miRNA:   3'- aaaGCUCCGuuG----UCAGCGa-AGUGG-CG- -5'
15933 5' -52.5 NC_004065.1 + 66126 0.68 0.963965
Target:  5'- --cCGAGGCGcUGGcgCGCUggGCCGCg -3'
miRNA:   3'- aaaGCUCCGUuGUCa-GCGAagUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 96843 0.69 0.960504
Target:  5'- uUUUCGAGaCGGCg--CGCUgUCGCCGCg -3'
miRNA:   3'- -AAAGCUCcGUUGucaGCGA-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 195106 0.69 0.960504
Target:  5'- ---aGGGGCGuCAGcUCGCcggcggugUCGCCGCa -3'
miRNA:   3'- aaagCUCCGUuGUC-AGCGa-------AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 97665 0.69 0.958321
Target:  5'- gUUCGcgaucuGGCGcaggaugugauacucGCGGUCGCUgcCGCCGCc -3'
miRNA:   3'- aAAGCu-----CCGU---------------UGUCAGCGAa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 97184 0.69 0.956821
Target:  5'- cUUCGGGGCuc--GUCGUcgCGCUGCg -3'
miRNA:   3'- aAAGCUCCGuuguCAGCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 111724 0.69 0.956821
Target:  5'- ---aGGGGCAucGCcGUCGCcUUCGCCuGCg -3'
miRNA:   3'- aaagCUCCGU--UGuCAGCG-AAGUGG-CG- -5'
15933 5' -52.5 NC_004065.1 + 56637 0.69 0.95644
Target:  5'- --gCGGuGGCAGCGGcCGCggcacccUUCACCGUc -3'
miRNA:   3'- aaaGCU-CCGUUGUCaGCG-------AAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 166736 0.69 0.95291
Target:  5'- -cUCGAugGGCAGCGGgaGC-UCGCCGUa -3'
miRNA:   3'- aaAGCU--CCGUUGUCagCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 43059 0.69 0.948767
Target:  5'- -cUCGAGGCGuCGG-CGCgacagACCGCa -3'
miRNA:   3'- aaAGCUCCGUuGUCaGCGaag--UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 169448 0.69 0.94439
Target:  5'- --cCGGGGCGccuuccGCGGUCuuucuCUUCGCCGUg -3'
miRNA:   3'- aaaGCUCCGU------UGUCAGc----GAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 154169 0.69 0.94439
Target:  5'- --gCGGcGGCGGCuGUUGCUggcUCGCCGUc -3'
miRNA:   3'- aaaGCU-CCGUUGuCAGCGA---AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 37159 0.7 0.938343
Target:  5'- -aUCGGcGGCAGCAGUgucagcaacuccgcCGCcgUCACCGa -3'
miRNA:   3'- aaAGCU-CCGUUGUCA--------------GCGa-AGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 101852 0.7 0.93492
Target:  5'- ---gGGGGCGuCGGgggCGCUaUCGCCGCc -3'
miRNA:   3'- aaagCUCCGUuGUCa--GCGA-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 111846 0.66 0.993632
Target:  5'- --cCGAacGGCGGCAGcCGUgacggcCGCCGCc -3'
miRNA:   3'- aaaGCU--CCGUUGUCaGCGaa----GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 211947 0.77 0.621013
Target:  5'- --aCGAGGCugcgGCGGUCGCU--GCCGCc -3'
miRNA:   3'- aaaGCUCCGu---UGUCAGCGAagUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.