miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 157130 0.71 0.913086
Target:  5'- ---gGGGGCAuCA-UCGCgUUCACCGCg -3'
miRNA:   3'- aaagCUCCGUuGUcAGCG-AAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 196713 0.7 0.918907
Target:  5'- cUUCGAGGagaauuACGuUCGCgUCGCCGCc -3'
miRNA:   3'- aAAGCUCCgu----UGUcAGCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 28995 0.7 0.929824
Target:  5'- -----cGGCGGCGGUgGCgaggCGCCGCg -3'
miRNA:   3'- aaagcuCCGUUGUCAgCGaa--GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 96117 0.7 0.939775
Target:  5'- cUUCGAGGC---GGUCGCU---CCGCg -3'
miRNA:   3'- aAAGCUCCGuugUCAGCGAaguGGCG- -5'
15933 5' -52.5 NC_004065.1 + 212792 0.69 0.94439
Target:  5'- -aUCGAGGCAGCugaggcccuuucGGaCGCUUUGgCGCu -3'
miRNA:   3'- aaAGCUCCGUUG------------UCaGCGAAGUgGCG- -5'
15933 5' -52.5 NC_004065.1 + 43799 0.69 0.948767
Target:  5'- ---aGGGGCAGCA-UCGCUcCAUCGUg -3'
miRNA:   3'- aaagCUCCGUUGUcAGCGAaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 212125 0.69 0.948767
Target:  5'- ---gGAGGCGACAGUCucucgacggGCguccgucCGCCGCu -3'
miRNA:   3'- aaagCUCCGUUGUCAG---------CGaa-----GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 138041 0.69 0.948767
Target:  5'- cUUCGGGGCGguuCAGauUCGUgcacgUUGCCGCg -3'
miRNA:   3'- aAAGCUCCGUu--GUC--AGCGa----AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 161848 0.71 0.900728
Target:  5'- --gCGGGGcCGACAgcuccGUCGCgcgCGCCGCc -3'
miRNA:   3'- aaaGCUCC-GUUGU-----CAGCGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 113584 0.71 0.900728
Target:  5'- aUUCGu-GCGACGGgCGCUaCACCGCc -3'
miRNA:   3'- aAAGCucCGUUGUCaGCGAaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 111846 0.66 0.993632
Target:  5'- --cCGAacGGCGGCAGcCGUgacggcCGCCGCc -3'
miRNA:   3'- aaaGCU--CCGUUGUCaGCGaa----GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 211947 0.77 0.621013
Target:  5'- --aCGAGGCugcgGCGGUCGCU--GCCGCc -3'
miRNA:   3'- aaaGCUCCGu---UGUCAGCGAagUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 38176 0.76 0.672395
Target:  5'- -aUCGcGGCGAUAGUCGCggccgUCACCa- -3'
miRNA:   3'- aaAGCuCCGUUGUCAGCGa----AGUGGcg -5'
15933 5' -52.5 NC_004065.1 + 16534 0.76 0.692776
Target:  5'- cUUUCGuGGCGucgACGGUCGCggCgACCGCu -3'
miRNA:   3'- -AAAGCuCCGU---UGUCAGCGaaG-UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 229450 0.74 0.771509
Target:  5'- -cUCGAGG-AACGcUCGCUUCACgGCu -3'
miRNA:   3'- aaAGCUCCgUUGUcAGCGAAGUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 119831 0.74 0.780883
Target:  5'- -cUCGAcgggcGGCGGCGcGUCGCggcCGCCGCa -3'
miRNA:   3'- aaAGCU-----CCGUUGU-CAGCGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 170300 0.73 0.816939
Target:  5'- ---aGAGuccGCGACGGUCGCcgugCGCCGCg -3'
miRNA:   3'- aaagCUC---CGUUGUCAGCGaa--GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 63053 0.73 0.816939
Target:  5'- -cUgGGGGCGgcGCAGUCGCaggagUCGCCGg -3'
miRNA:   3'- aaAgCUCCGU--UGUCAGCGa----AGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 205169 0.72 0.85345
Target:  5'- -gUCGAGGCcGCcGUCGCcgccaacaucgggCGCCGCg -3'
miRNA:   3'- aaAGCUCCGuUGuCAGCGaa-----------GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 61377 0.72 0.87322
Target:  5'- --aCGAGaCGACGGUCGCcgCGCCGg -3'
miRNA:   3'- aaaGCUCcGUUGUCAGCGaaGUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.