miRNA display CGI


Results 101 - 114 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 157130 0.71 0.913086
Target:  5'- ---gGGGGCAuCA-UCGCgUUCACCGCg -3'
miRNA:   3'- aaagCUCCGUuGUcAGCG-AAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 44297 0.68 0.975689
Target:  5'- --gCGAGaGCAAgAGUCcCUUCACCa- -3'
miRNA:   3'- aaaGCUC-CGUUgUCAGcGAAGUGGcg -5'
15933 5' -52.5 NC_004065.1 + 198013 0.68 0.973063
Target:  5'- --gCGAuGGCcucggaGGCGGUCGCggUCGCCGg -3'
miRNA:   3'- aaaGCU-CCG------UUGUCAGCGa-AGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 185859 0.68 0.970239
Target:  5'- -gUUGAGGCGcgaGCcuUCGCUgCACCGUu -3'
miRNA:   3'- aaAGCUCCGU---UGucAGCGAaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 54560 0.68 0.963965
Target:  5'- --aUGGGGCGugcucGCAGccuccugUGCUUCGCCGUg -3'
miRNA:   3'- aaaGCUCCGU-----UGUCa------GCGAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 199924 0.69 0.95291
Target:  5'- --cCGGGGCuGCAGcucUCGCU--ACCGCu -3'
miRNA:   3'- aaaGCUCCGuUGUC---AGCGAagUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 138041 0.69 0.948767
Target:  5'- cUUCGGGGCGguuCAGauUCGUgcacgUUGCCGCg -3'
miRNA:   3'- aAAGCUCCGUu--GUC--AGCGa----AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 212125 0.69 0.948767
Target:  5'- ---gGAGGCGACAGUCucucgacggGCguccgucCGCCGCu -3'
miRNA:   3'- aaagCUCCGUUGUCAG---------CGaa-----GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 43799 0.69 0.948767
Target:  5'- ---aGGGGCAGCA-UCGCUcCAUCGUg -3'
miRNA:   3'- aaagCUCCGUUGUcAGCGAaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 212792 0.69 0.94439
Target:  5'- -aUCGAGGCAGCugaggcccuuucGGaCGCUUUGgCGCu -3'
miRNA:   3'- aaAGCUCCGUUG------------UCaGCGAAGUgGCG- -5'
15933 5' -52.5 NC_004065.1 + 96117 0.7 0.939775
Target:  5'- cUUCGAGGC---GGUCGCU---CCGCg -3'
miRNA:   3'- aAAGCUCCGuugUCAGCGAaguGGCG- -5'
15933 5' -52.5 NC_004065.1 + 28995 0.7 0.929824
Target:  5'- -----cGGCGGCGGUgGCgaggCGCCGCg -3'
miRNA:   3'- aaagcuCCGUUGUCAgCGaa--GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 196713 0.7 0.918907
Target:  5'- cUUCGAGGagaauuACGuUCGCgUCGCCGCc -3'
miRNA:   3'- aAAGCUCCgu----UGUcAGCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 146734 0.82 0.350144
Target:  5'- --aCGAGGCAGCGGUCGgc-CGCCGCg -3'
miRNA:   3'- aaaGCUCCGUUGUCAGCgaaGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.