Results 21 - 40 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15933 | 5' | -52.5 | NC_004065.1 | + | 199924 | 0.69 | 0.95291 |
Target: 5'- --cCGGGGCuGCAGcucUCGCU--ACCGCu -3' miRNA: 3'- aaaGCUCCGuUGUC---AGCGAagUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 43799 | 0.69 | 0.948767 |
Target: 5'- ---aGGGGCAGCA-UCGCUcCAUCGUg -3' miRNA: 3'- aaagCUCCGUUGUcAGCGAaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 113584 | 0.71 | 0.900728 |
Target: 5'- aUUCGu-GCGACGGgCGCUaCACCGCc -3' miRNA: 3'- aAAGCucCGUUGUCaGCGAaGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 16534 | 0.76 | 0.692776 |
Target: 5'- cUUUCGuGGCGucgACGGUCGCggCgACCGCu -3' miRNA: 3'- -AAAGCuCCGU---UGUCAGCGaaG-UGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 184477 | 0.67 | 0.980371 |
Target: 5'- gUUUCuGGGCGGCuGcCGCcgcCGCCGCg -3' miRNA: 3'- -AAAGcUCCGUUGuCaGCGaa-GUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 33444 | 0.68 | 0.975689 |
Target: 5'- --aCGGGGCGACuGUgcUGCUUCugGCaCGCg -3' miRNA: 3'- aaaGCUCCGUUGuCA--GCGAAG--UG-GCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 96117 | 0.7 | 0.939775 |
Target: 5'- cUUCGAGGC---GGUCGCU---CCGCg -3' miRNA: 3'- aAAGCUCCGuugUCAGCGAaguGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 38176 | 0.76 | 0.672395 |
Target: 5'- -aUCGcGGCGAUAGUCGCggccgUCACCa- -3' miRNA: 3'- aaAGCuCCGUUGUCAGCGa----AGUGGcg -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 44297 | 0.68 | 0.975689 |
Target: 5'- --gCGAGaGCAAgAGUCcCUUCACCa- -3' miRNA: 3'- aaaGCUC-CGUUgUCAGcGAAGUGGcg -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 211947 | 0.77 | 0.621013 |
Target: 5'- --aCGAGGCugcgGCGGUCGCU--GCCGCc -3' miRNA: 3'- aaaGCUCCGu---UGUCAGCGAagUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 212792 | 0.69 | 0.94439 |
Target: 5'- -aUCGAGGCAGCugaggcccuuucGGaCGCUUUGgCGCu -3' miRNA: 3'- aaAGCUCCGUUG------------UCaGCGAAGUgGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 54560 | 0.68 | 0.963965 |
Target: 5'- --aUGGGGCGugcucGCAGccuccugUGCUUCGCCGUg -3' miRNA: 3'- aaaGCUCCGU-----UGUCa------GCGAAGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 157130 | 0.71 | 0.913086 |
Target: 5'- ---gGGGGCAuCA-UCGCgUUCACCGCg -3' miRNA: 3'- aaagCUCCGUuGUcAGCG-AAGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 161848 | 0.71 | 0.900728 |
Target: 5'- --gCGGGGcCGACAgcuccGUCGCgcgCGCCGCc -3' miRNA: 3'- aaaGCUCC-GUUGU-----CAGCGaa-GUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 63053 | 0.73 | 0.816939 |
Target: 5'- -cUgGGGGCGgcGCAGUCGCaggagUCGCCGg -3' miRNA: 3'- aaAgCUCCGU--UGUCAGCGa----AGUGGCg -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 229450 | 0.74 | 0.771509 |
Target: 5'- -cUCGAGG-AACGcUCGCUUCACgGCu -3' miRNA: 3'- aaAGCUCCgUUGUcAGCGAAGUGgCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 31190 | 0.67 | 0.984345 |
Target: 5'- -aUCG-GGCAAgAGUUGCUgguCCGUu -3' miRNA: 3'- aaAGCuCCGUUgUCAGCGAaguGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 130648 | 0.67 | 0.982443 |
Target: 5'- -cUCGAGucGgGACAGUCGgCgccgUCGCUGCc -3' miRNA: 3'- aaAGCUC--CgUUGUCAGC-Ga---AGUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 75856 | 0.68 | 0.978122 |
Target: 5'- --gCGAGccaGCAACAGcCGCcgcCGCCGCc -3' miRNA: 3'- aaaGCUC---CGUUGUCaGCGaa-GUGGCG- -5' |
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15933 | 5' | -52.5 | NC_004065.1 | + | 136629 | 0.68 | 0.975689 |
Target: 5'- --cCGAGGCGGCGGUC-CggaGCgGCg -3' miRNA: 3'- aaaGCUCCGUUGUCAGcGaagUGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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