miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 212125 0.69 0.948767
Target:  5'- ---gGAGGCGACAGUCucucgacggGCguccgucCGCCGCu -3'
miRNA:   3'- aaagCUCCGUUGUCAG---------CGaa-----GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 113584 0.71 0.900728
Target:  5'- aUUCGu-GCGACGGgCGCUaCACCGCc -3'
miRNA:   3'- aAAGCucCGUUGUCaGCGAaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 157130 0.71 0.913086
Target:  5'- ---gGGGGCAuCA-UCGCgUUCACCGCg -3'
miRNA:   3'- aaagCUCCGUuGUcAGCG-AAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 96117 0.7 0.939775
Target:  5'- cUUCGAGGC---GGUCGCU---CCGCg -3'
miRNA:   3'- aAAGCUCCGuugUCAGCGAaguGGCG- -5'
15933 5' -52.5 NC_004065.1 + 229450 0.74 0.771509
Target:  5'- -cUCGAGG-AACGcUCGCUUCACgGCu -3'
miRNA:   3'- aaAGCUCCgUUGUcAGCGAAGUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 167155 0.66 0.993632
Target:  5'- ---gGAGGcCAGCAGacCGCcacCACCGCu -3'
miRNA:   3'- aaagCUCC-GUUGUCa-GCGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 101423 0.66 0.992678
Target:  5'- -gUgGGGGCGgcuggcgcguGCGGaugCGcCUUCGCCGCc -3'
miRNA:   3'- aaAgCUCCGU----------UGUCa--GC-GAAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 94721 0.66 0.992577
Target:  5'- -cUCGAgcgggccgaagucGGCGGCGGagacgCGUUUCAgCGCg -3'
miRNA:   3'- aaAGCU-------------CCGUUGUCa----GCGAAGUgGCG- -5'
15933 5' -52.5 NC_004065.1 + 36293 0.67 0.987677
Target:  5'- --cCGAGGCGAUGG-CGCcUUCGaCGCu -3'
miRNA:   3'- aaaGCUCCGUUGUCaGCG-AAGUgGCG- -5'
15933 5' -52.5 NC_004065.1 + 31190 0.67 0.984345
Target:  5'- -aUCG-GGCAAgAGUUGCUgguCCGUu -3'
miRNA:   3'- aaAGCuCCGUUgUCAGCGAaguGGCG- -5'
15933 5' -52.5 NC_004065.1 + 94637 0.68 0.978122
Target:  5'- -gUCGGGcGCGGcCGG-CGCgUCACCGUc -3'
miRNA:   3'- aaAGCUC-CGUU-GUCaGCGaAGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 130648 0.67 0.982443
Target:  5'- -cUCGAGucGgGACAGUCGgCgccgUCGCUGCc -3'
miRNA:   3'- aaAGCUC--CgUUGUCAGC-Ga---AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 173894 0.68 0.975689
Target:  5'- --cCGAGGCuGCAGaagGCgagCGCCGCc -3'
miRNA:   3'- aaaGCUCCGuUGUCag-CGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 198013 0.68 0.973063
Target:  5'- --gCGAuGGCcucggaGGCGGUCGCggUCGCCGg -3'
miRNA:   3'- aaaGCU-CCG------UUGUCAGCGa-AGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 199924 0.69 0.95291
Target:  5'- --cCGGGGCuGCAGcucUCGCU--ACCGCu -3'
miRNA:   3'- aaaGCUCCGuUGUC---AGCGAagUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 119831 0.74 0.780883
Target:  5'- -cUCGAcgggcGGCGGCGcGUCGCggcCGCCGCa -3'
miRNA:   3'- aaAGCU-----CCGUUGU-CAGCGaa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 164556 0.66 0.993632
Target:  5'- -gUCGAgccGGCGGCGG-CGCcg-ACCGCu -3'
miRNA:   3'- aaAGCU---CCGUUGUCaGCGaagUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 196808 0.7 0.929824
Target:  5'- --aCGAGGCggUggggGGUCGUggUCACCuGCg -3'
miRNA:   3'- aaaGCUCCGuuG----UCAGCGa-AGUGG-CG- -5'
15933 5' -52.5 NC_004065.1 + 103140 0.68 0.970239
Target:  5'- --cCGAGGCGuuCAGcaCGCguagCACCGCc -3'
miRNA:   3'- aaaGCUCCGUu-GUCa-GCGaa--GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 164638 0.68 0.963965
Target:  5'- -cUCgGAGG-AACAGUCGggUCGCgGCg -3'
miRNA:   3'- aaAG-CUCCgUUGUCAGCgaAGUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.