miRNA display CGI


Results 61 - 80 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15933 5' -52.5 NC_004065.1 + 200752 0.71 0.887429
Target:  5'- --aCGAGGCGGCucacgcgucGGUCGCUcucUCGUCGCg -3'
miRNA:   3'- aaaGCUCCGUUG---------UCAGCGA---AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 103294 0.73 0.798314
Target:  5'- cUUCGAGGCccgcggcGGCAGgcucaGCggUCGCCGCa -3'
miRNA:   3'- aAAGCUCCG-------UUGUCag---CGa-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 67465 0.73 0.808158
Target:  5'- --cCGAGGCGGCGGUguacgugugcgaCGaCUUCACCGa -3'
miRNA:   3'- aaaGCUCCGUUGUCA------------GC-GAAGUGGCg -5'
15933 5' -52.5 NC_004065.1 + 128410 0.66 0.991614
Target:  5'- --cCGAgcGGCAGCGG-CgGCggCGCCGCc -3'
miRNA:   3'- aaaGCU--CCGUUGUCaG-CGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 164638 0.68 0.963965
Target:  5'- -cUCgGAGG-AACAGUCGggUCGCgGCg -3'
miRNA:   3'- aaAG-CUCCgUUGUCAGCgaAGUGgCG- -5'
15933 5' -52.5 NC_004065.1 + 66126 0.68 0.963965
Target:  5'- --cCGAGGCGcUGGcgCGCUggGCCGCg -3'
miRNA:   3'- aaaGCUCCGUuGUCa-GCGAagUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 96843 0.69 0.960504
Target:  5'- uUUUCGAGaCGGCg--CGCUgUCGCCGCg -3'
miRNA:   3'- -AAAGCUCcGUUGucaGCGA-AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 195106 0.69 0.960504
Target:  5'- ---aGGGGCGuCAGcUCGCcggcggugUCGCCGCa -3'
miRNA:   3'- aaagCUCCGUuGUC-AGCGa-------AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 97665 0.69 0.958321
Target:  5'- gUUCGcgaucuGGCGcaggaugugauacucGCGGUCGCUgcCGCCGCc -3'
miRNA:   3'- aAAGCu-----CCGU---------------UGUCAGCGAa-GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 97184 0.69 0.956821
Target:  5'- cUUCGGGGCuc--GUCGUcgCGCUGCg -3'
miRNA:   3'- aAAGCUCCGuuguCAGCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 83000 0.67 0.987677
Target:  5'- --cCGucGGCAGucUAGUCGCUUUcuGCUGCg -3'
miRNA:   3'- aaaGCu-CCGUU--GUCAGCGAAG--UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 88442 0.66 0.989122
Target:  5'- -gUCGcguuGGUGGCGGUCGCcUCG-CGCa -3'
miRNA:   3'- aaAGCu---CCGUUGUCAGCGaAGUgGCG- -5'
15933 5' -52.5 NC_004065.1 + 208336 0.66 0.990432
Target:  5'- ---aGAGGgAucGCGGUCGCguaUCugACCGCg -3'
miRNA:   3'- aaagCUCCgU--UGUCAGCGa--AG--UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 30614 0.66 0.990432
Target:  5'- --cCGAGGCAGCGacgcguguccGUC-CUUCACC-Cg -3'
miRNA:   3'- aaaGCUCCGUUGU----------CAGcGAAGUGGcG- -5'
15933 5' -52.5 NC_004065.1 + 122227 0.66 0.990432
Target:  5'- -cUCGAgcgGGcCGGCgGGUCGUUccugUCGCCGCu -3'
miRNA:   3'- aaAGCU---CC-GUUG-UCAGCGA----AGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 201146 0.66 0.991614
Target:  5'- -cUCGGGGCGccaGCAGUC-CUcgUCACgcaGCa -3'
miRNA:   3'- aaAGCUCCGU---UGUCAGcGA--AGUGg--CG- -5'
15933 5' -52.5 NC_004065.1 + 98147 0.66 0.992678
Target:  5'- --cUGGcGGUGAUAGUCGC--CGCCGCc -3'
miRNA:   3'- aaaGCU-CCGUUGUCAGCGaaGUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 19570 0.66 0.993632
Target:  5'- -gUCGGuGGCGGCGGUaGCgUCgGCUGCg -3'
miRNA:   3'- aaAGCU-CCGUUGUCAgCGaAG-UGGCG- -5'
15933 5' -52.5 NC_004065.1 + 151735 0.66 0.993632
Target:  5'- --cCGAGGCccucGAgAGcCGCUacgacCACCGCa -3'
miRNA:   3'- aaaGCUCCG----UUgUCaGCGAa----GUGGCG- -5'
15933 5' -52.5 NC_004065.1 + 164556 0.66 0.993632
Target:  5'- -gUCGAgccGGCGGCGG-CGCcg-ACCGCu -3'
miRNA:   3'- aaAGCU---CCGUUGUCaGCGaagUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.