Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15935 | 3' | -54.2 | NC_004065.1 | + | 116859 | 0.66 | 0.975463 |
Target: 5'- uGGAGGAGUugaagaucaucaGGCugGCGuGCCUGCu- -3' miRNA: 3'- -UCUUCUCAc-----------CCGugCGUuCGGAUGug -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 87602 | 0.66 | 0.970876 |
Target: 5'- uGAGGAGccGGCGCGCcggcaggcgaaagauGGCCcGCGCg -3' miRNA: 3'- uCUUCUCacCCGUGCGu--------------UCGGaUGUG- -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 154335 | 0.66 | 0.970589 |
Target: 5'- cAGGAG-GUGGGgGCGCGgccaagaaucAGCCcGCGg -3' miRNA: 3'- -UCUUCuCACCCgUGCGU----------UCGGaUGUg -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 149915 | 0.66 | 0.970589 |
Target: 5'- uGGAuGAG-GGGCGCGC-GGCUcgGCAg -3' miRNA: 3'- -UCUuCUCaCCCGUGCGuUCGGa-UGUg -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 50326 | 0.66 | 0.967599 |
Target: 5'- -aGAGAGUGguGGCACGCGuGGCCacCGCc -3' miRNA: 3'- ucUUCUCAC--CCGUGCGU-UCGGauGUG- -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 116575 | 0.67 | 0.962378 |
Target: 5'- uGAuauuGAG-GGGCACgGCGGGCCccccggccgccgcucUGCGCa -3' miRNA: 3'- uCUu---CUCaCCCGUG-CGUUCGG---------------AUGUG- -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 211401 | 0.67 | 0.957352 |
Target: 5'- uGGcGGAGgcgGGGgaaACGUggGCCUGgGCg -3' miRNA: 3'- -UCuUCUCa--CCCg--UGCGuuCGGAUgUG- -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 97647 | 0.67 | 0.957352 |
Target: 5'- cGGAGAa-GGGCgACGCGacGGCCUGCcCg -3' miRNA: 3'- uCUUCUcaCCCG-UGCGU--UCGGAUGuG- -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 124711 | 0.67 | 0.953494 |
Target: 5'- gGGAacAGAG-GuGGCGaGCAucaaAGCCUACGCg -3' miRNA: 3'- -UCU--UCUCaC-CCGUgCGU----UCGGAUGUG- -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 129150 | 0.67 | 0.953095 |
Target: 5'- cGGAGGAGaacuaccUGGG-GCGC-AGCCUGgACg -3' miRNA: 3'- -UCUUCUC-------ACCCgUGCGuUCGGAUgUG- -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 32660 | 0.67 | 0.948985 |
Target: 5'- aGGAGGAGUuccucgcGGGCgcgguucucGCGCAGcGCCUucgggACGCg -3' miRNA: 3'- -UCUUCUCA-------CCCG---------UGCGUU-CGGA-----UGUG- -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 148634 | 0.67 | 0.945088 |
Target: 5'- ---cGGGUGGGCAaGUAcuGCCUGCAg -3' miRNA: 3'- ucuuCUCACCCGUgCGUu-CGGAUGUg -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 148102 | 0.68 | 0.930713 |
Target: 5'- cGGAGAGaUGGuGCAC-CAcGCCUACGa -3' miRNA: 3'- uCUUCUC-ACC-CGUGcGUuCGGAUGUg -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 4409 | 0.68 | 0.925445 |
Target: 5'- cGGAGcGGUGGcCACgGCGGGCCUgACGCu -3' miRNA: 3'- uCUUC-UCACCcGUG-CGUUCGGA-UGUG- -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 108726 | 0.68 | 0.919937 |
Target: 5'- cAGAAG-G-GGGCGCGCGucGCCcucACGCg -3' miRNA: 3'- -UCUUCuCaCCCGUGCGUu-CGGa--UGUG- -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 30974 | 0.69 | 0.91419 |
Target: 5'- aAGAcGAGUGGGaUGCGCucGCCgcgucggGCGCu -3' miRNA: 3'- -UCUuCUCACCC-GUGCGuuCGGa------UGUG- -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 138446 | 0.69 | 0.91419 |
Target: 5'- cGAGGGGUcgGGGCGgGCGAGCa-GCAa -3' miRNA: 3'- uCUUCUCA--CCCGUgCGUUCGgaUGUg -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 29775 | 0.69 | 0.901985 |
Target: 5'- uGGGAGAcGUacggGGGCGCuccgGCGGGCCguUACACg -3' miRNA: 3'- -UCUUCU-CA----CCCGUG----CGUUCGG--AUGUG- -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 189945 | 0.69 | 0.895532 |
Target: 5'- cGAAGucaGGGCgGCGCAGGUCaGCACg -3' miRNA: 3'- uCUUCucaCCCG-UGCGUUCGGaUGUG- -5' |
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15935 | 3' | -54.2 | NC_004065.1 | + | 45827 | 0.7 | 0.866709 |
Target: 5'- ---cGGGUGGGCAUGUAucggaccGGCC-GCACg -3' miRNA: 3'- ucuuCUCACCCGUGCGU-------UCGGaUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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