miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15935 5' -55.7 NC_004065.1 + 32308 0.66 0.960615
Target:  5'- -gGUG-AAGCUcACGGCG-GCC-GCGa -3'
miRNA:   3'- caCACaUUCGAcUGCCGCaCGGaCGC- -5'
15935 5' -55.7 NC_004065.1 + 155568 0.66 0.960615
Target:  5'- -aGUGUcAGCgcuacgccgagGACGGCGUGCUcgagGCc -3'
miRNA:   3'- caCACAuUCGa----------CUGCCGCACGGa---CGc -5'
15935 5' -55.7 NC_004065.1 + 164552 0.66 0.960615
Target:  5'- cUGUGUcGAGCcGGCGGCGgcGCCgaccGCu -3'
miRNA:   3'- cACACA-UUCGaCUGCCGCa-CGGa---CGc -5'
15935 5' -55.7 NC_004065.1 + 41170 0.66 0.957022
Target:  5'- ---aGUAcguGCUGAUGGCGcguccaUGCCUGaCGg -3'
miRNA:   3'- cacaCAUu--CGACUGCCGC------ACGGAC-GC- -5'
15935 5' -55.7 NC_004065.1 + 59076 0.66 0.949182
Target:  5'- --aUGUGAGCgagaucGCGGCGcGCCgGCGa -3'
miRNA:   3'- cacACAUUCGac----UGCCGCaCGGaCGC- -5'
15935 5' -55.7 NC_004065.1 + 223896 0.66 0.949182
Target:  5'- -aGUagGAGCUGGCGGCG-GCg-GCGu -3'
miRNA:   3'- caCAcaUUCGACUGCCGCaCGgaCGC- -5'
15935 5' -55.7 NC_004065.1 + 154945 0.66 0.949182
Target:  5'- uUGUGUAuuCUGGCcG-GUGCCUGUGa -3'
miRNA:   3'- cACACAUucGACUGcCgCACGGACGC- -5'
15935 5' -55.7 NC_004065.1 + 101422 0.66 0.944927
Target:  5'- cGUGggGgcGGCUGGC-GCGUGCggaUGCGc -3'
miRNA:   3'- -CACa-CauUCGACUGcCGCACGg--ACGC- -5'
15935 5' -55.7 NC_004065.1 + 142602 0.66 0.944927
Target:  5'- -aGUGcuacgagGAGCUGAUGGCgGUGCCgaaccaagGCc -3'
miRNA:   3'- caCACa------UUCGACUGCCG-CACGGa-------CGc -5'
15935 5' -55.7 NC_004065.1 + 105640 0.67 0.92562
Target:  5'- -cGUaGUGAGCUGuucacuuucGCGGCGgaUGCC-GCGg -3'
miRNA:   3'- caCA-CAUUCGAC---------UGCCGC--ACGGaCGC- -5'
15935 5' -55.7 NC_004065.1 + 45979 0.67 0.92509
Target:  5'- cGUGUGUAacGGCgaccugggcgccgUGGCGGCGUugaacucggGUCUGCc -3'
miRNA:   3'- -CACACAU--UCG-------------ACUGCCGCA---------CGGACGc -5'
15935 5' -55.7 NC_004065.1 + 185541 0.67 0.920216
Target:  5'- -aGUGgcuGGCUGAC-GUGUcCCUGCGg -3'
miRNA:   3'- caCACau-UCGACUGcCGCAcGGACGC- -5'
15935 5' -55.7 NC_004065.1 + 34179 0.67 0.920216
Target:  5'- ---cGUGAGUUGACGGC--GCCgGCGc -3'
miRNA:   3'- cacaCAUUCGACUGCCGcaCGGaCGC- -5'
15935 5' -55.7 NC_004065.1 + 117343 0.67 0.914582
Target:  5'- -----aAAGCUGACGGUGUcGCCcgagGCGu -3'
miRNA:   3'- cacacaUUCGACUGCCGCA-CGGa---CGC- -5'
15935 5' -55.7 NC_004065.1 + 77004 0.68 0.908718
Target:  5'- -aGgagGAGgaGGCGGCGUG-CUGCGa -3'
miRNA:   3'- caCacaUUCgaCUGCCGCACgGACGC- -5'
15935 5' -55.7 NC_004065.1 + 116126 0.68 0.876034
Target:  5'- -cGgagGU-AGCUGGuCGGCGU-CCUGCGg -3'
miRNA:   3'- caCa--CAuUCGACU-GCCGCAcGGACGC- -5'
15935 5' -55.7 NC_004065.1 + 5840 0.68 0.876034
Target:  5'- -cGUGaacGAGgaGACGGCGUGaggaCUGUGa -3'
miRNA:   3'- caCACa--UUCgaCUGCCGCACg---GACGC- -5'
15935 5' -55.7 NC_004065.1 + 116858 0.69 0.853866
Target:  5'- cUGgagGAGUUGAagaucaucaggcUGGCGUGCCUGCu -3'
miRNA:   3'- cACacaUUCGACU------------GCCGCACGGACGc -5'
15935 5' -55.7 NC_004065.1 + 79253 0.7 0.795672
Target:  5'- -------cGCUGACGGCGcgaUGUCUGCGg -3'
miRNA:   3'- cacacauuCGACUGCCGC---ACGGACGC- -5'
15935 5' -55.7 NC_004065.1 + 77771 0.78 0.40384
Target:  5'- cUGUGcGAGCUGAUGGCGUGCUcguaccGCGa -3'
miRNA:   3'- cACACaUUCGACUGCCGCACGGa-----CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.