miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 163284 0.66 0.857033
Target:  5'- gGUCGcgacGCCGCCG-GGGUcCGACGGcACg -3'
miRNA:   3'- -CGGC----UGGCGGCgUCCAcGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 107461 0.66 0.857033
Target:  5'- gGgCGuCUGCCGCAGGaggaagGCuccGACGGUGu -3'
miRNA:   3'- -CgGCuGGCGGCGUCCa-----CG---CUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 30884 0.66 0.857033
Target:  5'- uUCGAgCGcCCGCAGG-GCGuCGGggucGCa -3'
miRNA:   3'- cGGCUgGC-GGCGUCCaCGCuGCCa---UG- -5'
15938 5' -60.3 NC_004065.1 + 128395 0.66 0.857033
Target:  5'- aGCCGGCUgugggggccgaGCgGCAGcG-GCGGCGGcGCc -3'
miRNA:   3'- -CGGCUGG-----------CGgCGUC-CaCGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 109480 0.66 0.857033
Target:  5'- cGCCGACCGCCGCcGGcacacCGGa-- -3'
miRNA:   3'- -CGGCUGGCGGCGuCCacgcuGCCaug -5'
15938 5' -60.3 NC_004065.1 + 102467 0.66 0.857033
Target:  5'- cGUCGACgucccacucguCGCaguaGCAGGgcacgGCGACGGgGCc -3'
miRNA:   3'- -CGGCUG-----------GCGg---CGUCCa----CGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 225162 0.66 0.857033
Target:  5'- gGgUGACCgaGCCG-AGG-GCGGCGGUGg -3'
miRNA:   3'- -CgGCUGG--CGGCgUCCaCGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 127685 0.66 0.856306
Target:  5'- uGCCGACC-UCGCagaGGGUGCucugaucGACGGa-- -3'
miRNA:   3'- -CGGCUGGcGGCG---UCCACG-------CUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 48094 0.66 0.856306
Target:  5'- cGCgGACCuguggcgGCgGCGGuGgcgGCGGCGGUGg -3'
miRNA:   3'- -CGgCUGG-------CGgCGUC-Ca--CGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 98608 0.66 0.854845
Target:  5'- cGCCGGuccgcagcaugguuUCGCCGCcuucGGUGCGcuCGGUcGCu -3'
miRNA:   3'- -CGGCU--------------GGCGGCGu---CCACGCu-GCCA-UG- -5'
15938 5' -60.3 NC_004065.1 + 200522 0.66 0.850419
Target:  5'- uCgGAUCGCCGCgcacAGGgcguccauggcgaggGCGACGGgcgGCa -3'
miRNA:   3'- cGgCUGGCGGCG----UCCa--------------CGCUGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 151196 0.66 0.849675
Target:  5'- gGCaCGugUGCUGCcGGUGCGACu---- -3'
miRNA:   3'- -CG-GCugGCGGCGuCCACGCUGccaug -5'
15938 5' -60.3 NC_004065.1 + 97557 0.66 0.849675
Target:  5'- cGCCuGCUGCaGCGGGUGCuugaaagacaggGGCGG-ACg -3'
miRNA:   3'- -CGGcUGGCGgCGUCCACG------------CUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 65338 0.66 0.849675
Target:  5'- cGgCGGCagcaGCUGCGGGUGgGuCGGUc- -3'
miRNA:   3'- -CgGCUGg---CGGCGUCCACgCuGCCAug -5'
15938 5' -60.3 NC_004065.1 + 35502 0.66 0.849675
Target:  5'- gGCaCGACCGgCGUcuuGGagGCGACGGa-- -3'
miRNA:   3'- -CG-GCUGGCgGCGu--CCa-CGCUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 167169 0.66 0.847433
Target:  5'- cGCCaccACCGCUGCcgggggagccuucgGGGUGgGugGGggGCa -3'
miRNA:   3'- -CGGc--UGGCGGCG--------------UCCACgCugCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 57460 0.66 0.83444
Target:  5'- cGCCG-UCGUgGCGauGGcGCGGCGGUGg -3'
miRNA:   3'- -CGGCuGGCGgCGU--CCaCGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 121476 0.66 0.83444
Target:  5'- gGUCGGCgCGuCCGCGGGcGUGAaGGUGg -3'
miRNA:   3'- -CGGCUG-GC-GGCGUCCaCGCUgCCAUg -5'
15938 5' -60.3 NC_004065.1 + 187391 0.66 0.826577
Target:  5'- aGCUGGCgCGCgGCGcGGUGUGGCGucgaggGCg -3'
miRNA:   3'- -CGGCUG-GCGgCGU-CCACGCUGCca----UG- -5'
15938 5' -60.3 NC_004065.1 + 209305 0.66 0.826577
Target:  5'- cGCCGucgUCGCCGUcGGUGcCGuCGuGUGCu -3'
miRNA:   3'- -CGGCu--GGCGGCGuCCAC-GCuGC-CAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.