miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 30884 0.66 0.857033
Target:  5'- uUCGAgCGcCCGCAGG-GCGuCGGggucGCa -3'
miRNA:   3'- cGGCUgGC-GGCGUCCaCGCuGCCa---UG- -5'
15938 5' -60.3 NC_004065.1 + 97557 0.66 0.849675
Target:  5'- cGCCuGCUGCaGCGGGUGCuugaaagacaggGGCGG-ACg -3'
miRNA:   3'- -CGGcUGGCGgCGUCCACG------------CUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 28740 0.66 0.818556
Target:  5'- cCCGGCCGCCGgAGG-GCcAaaGUACu -3'
miRNA:   3'- cGGCUGGCGGCgUCCaCGcUgcCAUG- -5'
15938 5' -60.3 NC_004065.1 + 107461 0.66 0.857033
Target:  5'- gGgCGuCUGCCGCAGGaggaagGCuccGACGGUGu -3'
miRNA:   3'- -CgGCuGGCGGCGUCCa-----CG---CUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 24599 0.66 0.818556
Target:  5'- cGCCGccaccGCCGCCGCcGGUGUuGCGa--- -3'
miRNA:   3'- -CGGC-----UGGCGGCGuCCACGcUGCcaug -5'
15938 5' -60.3 NC_004065.1 + 35502 0.66 0.849675
Target:  5'- gGCaCGACCGgCGUcuuGGagGCGACGGa-- -3'
miRNA:   3'- -CG-GCUGGCgGCGu--CCa-CGCUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 98608 0.66 0.854845
Target:  5'- cGCCGGuccgcagcaugguuUCGCCGCcuucGGUGCGcuCGGUcGCu -3'
miRNA:   3'- -CGGCU--------------GGCGGCGu---CCACGCu-GCCA-UG- -5'
15938 5' -60.3 NC_004065.1 + 128395 0.66 0.857033
Target:  5'- aGCCGGCUgugggggccgaGCgGCAGcG-GCGGCGGcGCc -3'
miRNA:   3'- -CGGCUGG-----------CGgCGUC-CaCGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 105747 0.66 0.810387
Target:  5'- -aCGACUucCCGCAguaccagcGGUGCGACGGcgGCu -3'
miRNA:   3'- cgGCUGGc-GGCGU--------CCACGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 200522 0.66 0.850419
Target:  5'- uCgGAUCGCCGCgcacAGGgcguccauggcgaggGCGACGGgcgGCa -3'
miRNA:   3'- cGgCUGGCGGCG----UCCa--------------CGCUGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 121476 0.66 0.83444
Target:  5'- gGUCGGCgCGuCCGCGGGcGUGAaGGUGg -3'
miRNA:   3'- -CGGCUG-GC-GGCGUCCaCGCUgCCAUg -5'
15938 5' -60.3 NC_004065.1 + 97486 0.66 0.818556
Target:  5'- gGCCcgGAgUGCCGCAGcGaucUGCGGCGGa-- -3'
miRNA:   3'- -CGG--CUgGCGGCGUC-C---ACGCUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 48094 0.66 0.856306
Target:  5'- cGCgGACCuguggcgGCgGCGGuGgcgGCGGCGGUGg -3'
miRNA:   3'- -CGgCUGG-------CGgCGUC-Ca--CGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 225162 0.66 0.857033
Target:  5'- gGgUGACCgaGCCG-AGG-GCGGCGGUGg -3'
miRNA:   3'- -CgGCUGG--CGGCgUCCaCGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 163284 0.66 0.857033
Target:  5'- gGUCGcgacGCCGCCG-GGGUcCGACGGcACg -3'
miRNA:   3'- -CGGC----UGGCGGCgUCCAcGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 130160 0.66 0.811211
Target:  5'- gGCCGucgcuauccgcgaccCCGgCGCcaucuGGUGCGACGGgGCc -3'
miRNA:   3'- -CGGCu--------------GGCgGCGu----CCACGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 104415 0.66 0.810387
Target:  5'- aGCCgGugCGCCuuuuGUGGG-GCagaGACGGUACg -3'
miRNA:   3'- -CGG-CugGCGG----CGUCCaCG---CUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 57460 0.66 0.83444
Target:  5'- cGCCG-UCGUgGCGauGGcGCGGCGGUGg -3'
miRNA:   3'- -CGGCuGGCGgCGU--CCaCGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 135133 0.66 0.810387
Target:  5'- gGgCGGgCGCgGCGGGUGaugaCGACGGggACg -3'
miRNA:   3'- -CgGCUgGCGgCGUCCAC----GCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 45537 0.66 0.810387
Target:  5'- cCCGG-CGCCGCGGcG-GCGGCGGc-- -3'
miRNA:   3'- cGGCUgGCGGCGUC-CaCGCUGCCaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.