Results 21 - 40 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 65338 | 0.66 | 0.849675 |
Target: 5'- cGgCGGCagcaGCUGCGGGUGgGuCGGUc- -3' miRNA: 3'- -CgGCUGg---CGGCGUCCACgCuGCCAug -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 104415 | 0.66 | 0.810387 |
Target: 5'- aGCCgGugCGCCuuuuGUGGG-GCagaGACGGUACg -3' miRNA: 3'- -CGG-CugGCGG----CGUCCaCG---CUGCCAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 130160 | 0.66 | 0.811211 |
Target: 5'- gGCCGucgcuauccgcgaccCCGgCGCcaucuGGUGCGACGGgGCc -3' miRNA: 3'- -CGGCu--------------GGCgGCGu----CCACGCUGCCaUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 135133 | 0.66 | 0.810387 |
Target: 5'- gGgCGGgCGCgGCGGGUGaugaCGACGGggACg -3' miRNA: 3'- -CgGCUgGCGgCGUCCAC----GCUGCCa-UG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 45537 | 0.66 | 0.810387 |
Target: 5'- cCCGG-CGCCGCGGcG-GCGGCGGc-- -3' miRNA: 3'- cGGCUgGCGGCGUC-CaCGCUGCCaug -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 97486 | 0.66 | 0.818556 |
Target: 5'- gGCCcgGAgUGCCGCAGcGaucUGCGGCGGa-- -3' miRNA: 3'- -CGG--CUgGCGGCGUC-C---ACGCUGCCaug -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 28740 | 0.66 | 0.818556 |
Target: 5'- cCCGGCCGCCGgAGG-GCcAaaGUACu -3' miRNA: 3'- cGGCUGGCGGCgUCCaCGcUgcCAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 24599 | 0.66 | 0.818556 |
Target: 5'- cGCCGccaccGCCGCCGCcGGUGUuGCGa--- -3' miRNA: 3'- -CGGC-----UGGCGGCGuCCACGcUGCcaug -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 57460 | 0.66 | 0.83444 |
Target: 5'- cGCCG-UCGUgGCGauGGcGCGGCGGUGg -3' miRNA: 3'- -CGGCuGGCGgCGU--CCaCGCUGCCAUg -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 121476 | 0.66 | 0.83444 |
Target: 5'- gGUCGGCgCGuCCGCGGGcGUGAaGGUGg -3' miRNA: 3'- -CGGCUG-GC-GGCGUCCaCGCUgCCAUg -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 200522 | 0.66 | 0.850419 |
Target: 5'- uCgGAUCGCCGCgcacAGGgcguccauggcgaggGCGACGGgcgGCa -3' miRNA: 3'- cGgCUGGCGGCG----UCCa--------------CGCUGCCa--UG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 97557 | 0.66 | 0.849675 |
Target: 5'- cGCCuGCUGCaGCGGGUGCuugaaagacaggGGCGG-ACg -3' miRNA: 3'- -CGGcUGGCGgCGUCCACG------------CUGCCaUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 35502 | 0.66 | 0.849675 |
Target: 5'- gGCaCGACCGgCGUcuuGGagGCGACGGa-- -3' miRNA: 3'- -CG-GCUGGCgGCGu--CCa-CGCUGCCaug -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 139646 | 0.67 | 0.802075 |
Target: 5'- cGCCGGCUccaagcuguGCgGCGcGUGCGGCGGccGCu -3' miRNA: 3'- -CGGCUGG---------CGgCGUcCACGCUGCCa-UG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 51125 | 0.67 | 0.758621 |
Target: 5'- cGCCGAUUGCUGCGGcacGUaGCGGCGcgacuuccaGUACa -3' miRNA: 3'- -CGGCUGGCGGCGUC---CA-CGCUGC---------CAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 83298 | 0.67 | 0.792774 |
Target: 5'- gGCCGACCGCUGCcucGUGaagaugagauacaCGACGGcuaGCa -3' miRNA: 3'- -CGGCUGGCGGCGuc-CAC-------------GCUGCCa--UG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 157101 | 0.67 | 0.793626 |
Target: 5'- cCCGACuCGCCGcCGGGgGCGccuucaGCGGggGCa -3' miRNA: 3'- cGGCUG-GCGGC-GUCCaCGC------UGCCa-UG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 88435 | 0.67 | 0.793626 |
Target: 5'- cGCCG-CCGUCGCGuugGUGGCGGUcGCc -3' miRNA: 3'- -CGGCuGGCGGCGUccaCGCUGCCA-UG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 115197 | 0.67 | 0.802075 |
Target: 5'- uCCGGCCGUgGCcGccGCGACGGgGCa -3' miRNA: 3'- cGGCUGGCGgCGuCcaCGCUGCCaUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 6233 | 0.67 | 0.802075 |
Target: 5'- uGCCGcACCgGCUGgAGGUaguccugucguGCGGCGGggACg -3' miRNA: 3'- -CGGC-UGG-CGGCgUCCA-----------CGCUGCCa-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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