miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 114447 0.67 0.758621
Target:  5'- cGCCGccaccaccACCGCCGUcucaccaucgcGGcgGUGGCGGUACu -3'
miRNA:   3'- -CGGC--------UGGCGGCGu----------CCa-CGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 202484 0.67 0.78505
Target:  5'- uGUCGACCuGCgGCGcGUGCGAgUGGUGg -3'
miRNA:   3'- -CGGCUGG-CGgCGUcCACGCU-GCCAUg -5'
15938 5' -60.3 NC_004065.1 + 4084 0.67 0.775475
Target:  5'- -aCGAgcaacacCCGCCGCGGGaGaCGACGGgaaGCg -3'
miRNA:   3'- cgGCU-------GGCGGCGUCCaC-GCUGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 87607 0.67 0.793626
Target:  5'- aGCCGGCgCGCCgGCAGGcGaaaGAUGGcccGCg -3'
miRNA:   3'- -CGGCUG-GCGG-CGUCCaCg--CUGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 121416 0.67 0.792774
Target:  5'- cGCaGACC-CUGCAGGUacuggagGCGAUGcGUGCg -3'
miRNA:   3'- -CGgCUGGcGGCGUCCA-------CGCUGC-CAUG- -5'
15938 5' -60.3 NC_004065.1 + 184490 0.67 0.793626
Target:  5'- uGCCG-CCGCCGCcgcgGCGcCGGgugGCg -3'
miRNA:   3'- -CGGCuGGCGGCGuccaCGCuGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 157101 0.67 0.793626
Target:  5'- cCCGACuCGCCGcCGGGgGCGccuucaGCGGggGCa -3'
miRNA:   3'- cGGCUG-GCGGC-GUCCaCGC------UGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 139646 0.67 0.802075
Target:  5'- cGCCGGCUccaagcuguGCgGCGcGUGCGGCGGccGCu -3'
miRNA:   3'- -CGGCUGG---------CGgCGUcCACGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 99124 0.67 0.757724
Target:  5'- uUUGACgGCaaCGCAGGUGCGgccgacgGCGGUAa -3'
miRNA:   3'- cGGCUGgCG--GCGUCCACGC-------UGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 6233 0.67 0.802075
Target:  5'- uGCCGcACCgGCUGgAGGUaguccugucguGCGGCGGggACg -3'
miRNA:   3'- -CGGC-UGG-CGGCgUCCA-----------CGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 159915 0.67 0.76754
Target:  5'- cGCCG-CCGCCGCcGcUGC--CGGUGCu -3'
miRNA:   3'- -CGGCuGGCGGCGuCcACGcuGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 173032 0.68 0.731304
Target:  5'- cGuuGGCUGuuaCCGCuAGGUgGCGACGGaACa -3'
miRNA:   3'- -CggCUGGC---GGCG-UCCA-CGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 125875 0.68 0.749604
Target:  5'- aCCGAcaCCGCCGCGGaagGCGACGa--- -3'
miRNA:   3'- cGGCU--GGCGGCGUCca-CGCUGCcaug -5'
15938 5' -60.3 NC_004065.1 + 60540 0.68 0.703304
Target:  5'- aGCCGACgaaGCCGCcGGaGaCGACGGagACg -3'
miRNA:   3'- -CGGCUGg--CGGCGuCCaC-GCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 152222 0.68 0.73038
Target:  5'- cCCGcaGCUGCUGCAGGaacacguUGUcGCGGUACg -3'
miRNA:   3'- cGGC--UGGCGGCGUCC-------ACGcUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 63531 0.68 0.7127
Target:  5'- gGCCguaGAUCGCCGCGagcguguucuuGGUgGCGGCGGagACg -3'
miRNA:   3'- -CGG---CUGGCGGCGU-----------CCA-CGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 116320 0.68 0.749604
Target:  5'- cGUCGGCgGCgGCAGcG-GCGACGGc-- -3'
miRNA:   3'- -CGGCUGgCGgCGUC-CaCGCUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 28844 0.68 0.7127
Target:  5'- aGCCggGACgCGCCGCuuGGUGuCGGCGcUGCu -3'
miRNA:   3'- -CGG--CUG-GCGGCGu-CCAC-GCUGCcAUG- -5'
15938 5' -60.3 NC_004065.1 + 170315 0.68 0.740495
Target:  5'- cGCCGugCGCCGCGGccGCu-CGGcGCc -3'
miRNA:   3'- -CGGCugGCGGCGUCcaCGcuGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 195790 0.68 0.722036
Target:  5'- gGCgGACCGCgggcccugCGCugaagggucGGGUGgGACGGUGa -3'
miRNA:   3'- -CGgCUGGCG--------GCG---------UCCACgCUGCCAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.