Results 21 - 40 of 135 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 31666 | 0.73 | 0.468506 |
Target: 5'- cGCCGACCacccgGCgGUcccaagcgaAGGUGCGuCGGUGCc -3' miRNA: 3'- -CGGCUGG-----CGgCG---------UCCACGCuGCCAUG- -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 88921 | 0.72 | 0.513404 |
Target: 5'- cGUCGGCgaUGCCGCugaAGGcGCGGCGGUAg -3' miRNA: 3'- -CGGCUG--GCGGCG---UCCaCGCUGCCAUg -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 21313 | 0.72 | 0.504276 |
Target: 5'- uGCaCGACCGCCuCGGcGUGCGcgGCGGUcaACa -3' miRNA: 3'- -CG-GCUGGCGGcGUC-CACGC--UGCCA--UG- -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 116003 | 0.72 | 0.495218 |
Target: 5'- cGCCGACgugCGCCGCGGGggcagcucucUGCcGACGGg-- -3' miRNA: 3'- -CGGCUG---GCGGCGUCC----------ACG-CUGCCaug -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 145691 | 0.72 | 0.486235 |
Target: 5'- -aCGACCGCCGCuaacGG-GCGGgGGUAg -3' miRNA: 3'- cgGCUGGCGGCGu---CCaCGCUgCCAUg -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 199848 | 0.72 | 0.486235 |
Target: 5'- gGCCaccACCGCCGCAGGcacuCGuCGGUGCc -3' miRNA: 3'- -CGGc--UGGCGGCGUCCac--GCuGCCAUG- -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 197363 | 0.72 | 0.477329 |
Target: 5'- gGCCGAuucuCCGCCGCGGGccgugGCGAUGuugACa -3' miRNA: 3'- -CGGCU----GGCGGCGUCCa----CGCUGCca-UG- -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 129986 | 0.72 | 0.486235 |
Target: 5'- cGCaGAaCGCCGCGGGgGCGGCGG-ACg -3' miRNA: 3'- -CGgCUgGCGGCGUCCaCGCUGCCaUG- -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 31708 | 0.71 | 0.559023 |
Target: 5'- gGCCGuuCCGCgGCAuGUGCGaccccgaguucaaGCGGUGCu -3' miRNA: 3'- -CGGCu-GGCGgCGUcCACGC-------------UGCCAUG- -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 99861 | 0.71 | 0.541176 |
Target: 5'- cCCGAUCGCCGCc-GUGCGAgGGg-- -3' miRNA: 3'- cGGCUGGCGGCGucCACGCUgCCaug -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 66607 | 0.71 | 0.569431 |
Target: 5'- cGCgGACaggauccggaGCCGCGGGcUGCGGCGcUGCg -3' miRNA: 3'- -CGgCUGg---------CGGCGUCC-ACGCUGCcAUG- -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 104677 | 0.71 | 0.551487 |
Target: 5'- cGCCGGagggucacgaggcgaCGCUGCAGGUGCuGCGGg-- -3' miRNA: 3'- -CGGCUg--------------GCGGCGUCCACGcUGCCaug -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 31476 | 0.71 | 0.559967 |
Target: 5'- uCCGuGCCGCgCGCGgaccuGGUGCGGCugaGGUACa -3' miRNA: 3'- cGGC-UGGCG-GCGU-----CCACGCUG---CCAUG- -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 104883 | 0.71 | 0.559967 |
Target: 5'- gGCUGAUCGCCacGCGGcuggGCGACGGcGCg -3' miRNA: 3'- -CGGCUGGCGG--CGUCca--CGCUGCCaUG- -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 107505 | 0.71 | 0.550547 |
Target: 5'- cGCuCGACCGCuCGCacgaggAGGUGCGcGCGGcgACc -3' miRNA: 3'- -CG-GCUGGCG-GCG------UCCACGC-UGCCa-UG- -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 163975 | 0.71 | 0.550547 |
Target: 5'- cGCUGuCCGCCGUca--GCGAUGGUGCg -3' miRNA: 3'- -CGGCuGGCGGCGuccaCGCUGCCAUG- -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 153464 | 0.71 | 0.541176 |
Target: 5'- cGCCGcuuuuCUGCgGCauguguacgggGGGUGCGACaGGUGCg -3' miRNA: 3'- -CGGCu----GGCGgCG-----------UCCACGCUG-CCAUG- -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 59752 | 0.71 | 0.550547 |
Target: 5'- uGCCGACCGCguggccgaUGguGGcgGCGGCGGccACg -3' miRNA: 3'- -CGGCUGGCG--------GCguCCa-CGCUGCCa-UG- -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 47321 | 0.7 | 0.636457 |
Target: 5'- gGCCGAuCCGCgGCGGGggGCaACGGa-- -3' miRNA: 3'- -CGGCU-GGCGgCGUCCa-CGcUGCCaug -5' |
|||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 60339 | 0.7 | 0.636457 |
Target: 5'- uGCCGG-CGCCGUAcgcguuGGUGCGcACGGUc- -3' miRNA: 3'- -CGGCUgGCGGCGU------CCACGC-UGCCAug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home