miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 7403 1.11 0.001506
Target:  5'- gGCCGACCGCCGCAGGUGCGACGGUACg -3'
miRNA:   3'- -CGGCUGGCGGCGUCCACGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 141354 0.77 0.268053
Target:  5'- cGUCGuCCGCuCGCGGGUGCuGGCGGcGCu -3'
miRNA:   3'- -CGGCuGGCG-GCGUCCACG-CUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 167412 0.75 0.333209
Target:  5'- uGCCGcggcugcuGCCGCCgGCGGGgGCGGCGGcGCu -3'
miRNA:   3'- -CGGC--------UGGCGG-CGUCCaCGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 148850 0.75 0.354895
Target:  5'- aGgCGGCCGCCGCgaucgaggAGGcgGCGGCGGgggGCg -3'
miRNA:   3'- -CgGCUGGCGGCG--------UCCa-CGCUGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 52657 0.75 0.354895
Target:  5'- cUUGGCCGCCGCuGGcgGUGGCGGUGg -3'
miRNA:   3'- cGGCUGGCGGCGuCCa-CGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 123875 0.75 0.354895
Target:  5'- uCCGcACgCGCCGCAGGUGCG-CcGUGCa -3'
miRNA:   3'- cGGC-UG-GCGGCGUCCACGCuGcCAUG- -5'
15938 5' -60.3 NC_004065.1 + 162400 0.75 0.362342
Target:  5'- aCCGGCaucucgaaCGCCGUAcGGUGCGACGG-ACg -3'
miRNA:   3'- cGGCUG--------GCGGCGU-CCACGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 99939 0.75 0.362342
Target:  5'- cGCCgGACCGCCGCg---GCGGCGGcUGCu -3'
miRNA:   3'- -CGG-CUGGCGGCGuccaCGCUGCC-AUG- -5'
15938 5' -60.3 NC_004065.1 + 127988 0.74 0.377558
Target:  5'- cCCGGCCGCCGCGGGUcacCGA-GGUGg -3'
miRNA:   3'- cGGCUGGCGGCGUCCAc--GCUgCCAUg -5'
15938 5' -60.3 NC_004065.1 + 48450 0.74 0.393197
Target:  5'- aCCGuACCcagGCUGCAGGagGUGACGGUGCc -3'
miRNA:   3'- cGGC-UGG---CGGCGUCCa-CGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 115562 0.74 0.393197
Target:  5'- cGCC-ACCGCCGCGauGGUGagaCGGCGGUGg -3'
miRNA:   3'- -CGGcUGGCGGCGU--CCAC---GCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 173315 0.74 0.409252
Target:  5'- cGCCG-CCGCCGCcGcUGCGGCGGa-- -3'
miRNA:   3'- -CGGCuGGCGGCGuCcACGCUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 196822 0.73 0.425708
Target:  5'- gGUCGuggucacCUGCgGCAGGUgcggGCGACGGUACa -3'
miRNA:   3'- -CGGCu------GGCGgCGUCCA----CGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 181935 0.73 0.425708
Target:  5'- cGCCG-CCGCCaCAGGUccGCGAgGGUGa -3'
miRNA:   3'- -CGGCuGGCGGcGUCCA--CGCUgCCAUg -5'
15938 5' -60.3 NC_004065.1 + 207117 0.73 0.433241
Target:  5'- cGCCGACCGCCGCcacugaccgcguuGGGaggcUGCGACagcagcGUGCu -3'
miRNA:   3'- -CGGCUGGCGGCG-------------UCC----ACGCUGc-----CAUG- -5'
15938 5' -60.3 NC_004065.1 + 102903 0.73 0.439153
Target:  5'- cGCCG-CCGCCGCgauGGGggagaacuggacgGCGACGGaGCu -3'
miRNA:   3'- -CGGCuGGCGGCG---UCCa------------CGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 154253 0.73 0.450254
Target:  5'- cGCCGACCGCCGCcuccgccucccccGGGUcaGCGcUGGgGCa -3'
miRNA:   3'- -CGGCUGGCGGCG-------------UCCA--CGCuGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 109852 0.73 0.451114
Target:  5'- gGCC-AUCG-CGCAGGUGCcgGGCGGUGCc -3'
miRNA:   3'- -CGGcUGGCgGCGUCCACG--CUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 205513 0.73 0.451114
Target:  5'- cGCCGccaucuugggGCCGgCGCucAGGgccgGCGGCGGUGCc -3'
miRNA:   3'- -CGGC----------UGGCgGCG--UCCa---CGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 31666 0.73 0.468506
Target:  5'- cGCCGACCacccgGCgGUcccaagcgaAGGUGCGuCGGUGCc -3'
miRNA:   3'- -CGGCUGG-----CGgCG---------UCCACGCuGCCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.