miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 105426 0.73 0.468506
Target:  5'- uGCUGGCCGCgcuggUGCGGGacgugGCGACGG-ACg -3'
miRNA:   3'- -CGGCUGGCG-----GCGUCCa----CGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 197363 0.72 0.477329
Target:  5'- gGCCGAuucuCCGCCGCGGGccgugGCGAUGuugACa -3'
miRNA:   3'- -CGGCU----GGCGGCGUCCa----CGCUGCca-UG- -5'
15938 5' -60.3 NC_004065.1 + 129986 0.72 0.486235
Target:  5'- cGCaGAaCGCCGCGGGgGCGGCGG-ACg -3'
miRNA:   3'- -CGgCUgGCGGCGUCCaCGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 199848 0.72 0.486235
Target:  5'- gGCCaccACCGCCGCAGGcacuCGuCGGUGCc -3'
miRNA:   3'- -CGGc--UGGCGGCGUCCac--GCuGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 145691 0.72 0.486235
Target:  5'- -aCGACCGCCGCuaacGG-GCGGgGGUAg -3'
miRNA:   3'- cgGCUGGCGGCGu---CCaCGCUgCCAUg -5'
15938 5' -60.3 NC_004065.1 + 116003 0.72 0.495218
Target:  5'- cGCCGACgugCGCCGCGGGggcagcucucUGCcGACGGg-- -3'
miRNA:   3'- -CGGCUG---GCGGCGUCC----------ACG-CUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 21313 0.72 0.504276
Target:  5'- uGCaCGACCGCCuCGGcGUGCGcgGCGGUcaACa -3'
miRNA:   3'- -CG-GCUGGCGGcGUC-CACGC--UGCCA--UG- -5'
15938 5' -60.3 NC_004065.1 + 88921 0.72 0.513404
Target:  5'- cGUCGGCgaUGCCGCugaAGGcGCGGCGGUAg -3'
miRNA:   3'- -CGGCUG--GCGGCG---UCCaCGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 99861 0.71 0.541176
Target:  5'- cCCGAUCGCCGCc-GUGCGAgGGg-- -3'
miRNA:   3'- cGGCUGGCGGCGucCACGCUgCCaug -5'
15938 5' -60.3 NC_004065.1 + 153464 0.71 0.541176
Target:  5'- cGCCGcuuuuCUGCgGCauguguacgggGGGUGCGACaGGUGCg -3'
miRNA:   3'- -CGGCu----GGCGgCG-----------UCCACGCUG-CCAUG- -5'
15938 5' -60.3 NC_004065.1 + 59752 0.71 0.550547
Target:  5'- uGCCGACCGCguggccgaUGguGGcgGCGGCGGccACg -3'
miRNA:   3'- -CGGCUGGCG--------GCguCCa-CGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 163975 0.71 0.550547
Target:  5'- cGCUGuCCGCCGUca--GCGAUGGUGCg -3'
miRNA:   3'- -CGGCuGGCGGCGuccaCGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 107505 0.71 0.550547
Target:  5'- cGCuCGACCGCuCGCacgaggAGGUGCGcGCGGcgACc -3'
miRNA:   3'- -CG-GCUGGCG-GCG------UCCACGC-UGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 104677 0.71 0.551487
Target:  5'- cGCCGGagggucacgaggcgaCGCUGCAGGUGCuGCGGg-- -3'
miRNA:   3'- -CGGCUg--------------GCGGCGUCCACGcUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 31708 0.71 0.559023
Target:  5'- gGCCGuuCCGCgGCAuGUGCGaccccgaguucaaGCGGUGCu -3'
miRNA:   3'- -CGGCu-GGCGgCGUcCACGC-------------UGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 104883 0.71 0.559967
Target:  5'- gGCUGAUCGCCacGCGGcuggGCGACGGcGCg -3'
miRNA:   3'- -CGGCUGGCGG--CGUCca--CGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 31476 0.71 0.559967
Target:  5'- uCCGuGCCGCgCGCGgaccuGGUGCGGCugaGGUACa -3'
miRNA:   3'- cGGC-UGGCG-GCGU-----CCACGCUG---CCAUG- -5'
15938 5' -60.3 NC_004065.1 + 66607 0.71 0.569431
Target:  5'- cGCgGACaggauccggaGCCGCGGGcUGCGGCGcUGCg -3'
miRNA:   3'- -CGgCUGg---------CGGCGUCC-ACGCUGCcAUG- -5'
15938 5' -60.3 NC_004065.1 + 191249 0.7 0.588472
Target:  5'- cGCCaGACCGUCaGCccGGUGUGgaaACGGUACu -3'
miRNA:   3'- -CGG-CUGGCGG-CGu-CCACGC---UGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 222639 0.7 0.594208
Target:  5'- gGUCGGCCcuuuacauacucaCCGCAGGUGUGgGCGGUGa -3'
miRNA:   3'- -CGGCUGGc------------GGCGUCCACGC-UGCCAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.