miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 105642 0.7 0.598037
Target:  5'- uGCCGaaGCUGCUGCAGGaGUaccuGACGGUGa -3'
miRNA:   3'- -CGGC--UGGCGGCGUCCaCG----CUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 132093 0.7 0.598037
Target:  5'- cGCUG-CCGCCGgAGGaacUGCGGguccUGGUACa -3'
miRNA:   3'- -CGGCuGGCGGCgUCC---ACGCU----GCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 102380 0.7 0.607624
Target:  5'- cGCCGcccucGgCGCCGCAGcGgcagcGCGAgCGGUGCa -3'
miRNA:   3'- -CGGC-----UgGCGGCGUC-Ca----CGCU-GCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 113142 0.7 0.617227
Target:  5'- aCCcACCGCCGCA--UGCgGugGGUGCa -3'
miRNA:   3'- cGGcUGGCGGCGUccACG-CugCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 116831 0.7 0.617227
Target:  5'- aGCgUGGCCGUgaUGguGGUGCaGugGGUGCc -3'
miRNA:   3'- -CG-GCUGGCG--GCguCCACG-CugCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 97016 0.7 0.617227
Target:  5'- uGCCGcugcugcuACUGUCGUGGGUGCuGCGcGUGCg -3'
miRNA:   3'- -CGGC--------UGGCGGCGUCCACGcUGC-CAUG- -5'
15938 5' -60.3 NC_004065.1 + 187990 0.7 0.623955
Target:  5'- -gCGGCCGCgCGCaacauggcucgcggAGGUccGCGACGGUAg -3'
miRNA:   3'- cgGCUGGCG-GCG--------------UCCA--CGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 17260 0.7 0.623955
Target:  5'- cGUCGAccuccucuucuucaCCGCCGgaggugguguCGGGUGCGGCGGagACa -3'
miRNA:   3'- -CGGCU--------------GGCGGC----------GUCCACGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 155808 0.7 0.62684
Target:  5'- cGCCGAUUaccaucacggGCU-CAGGUucGCGACGGUGCg -3'
miRNA:   3'- -CGGCUGG----------CGGcGUCCA--CGCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 18130 0.7 0.62684
Target:  5'- uCCGGgcCCGCCGCGGGacgggaUGuUGGCGGUAUc -3'
miRNA:   3'- cGGCU--GGCGGCGUCC------AC-GCUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 99953 0.7 0.62684
Target:  5'- cGCCGuagucgaccACCGCCGCGGcGUGCu-CGGgccGCg -3'
miRNA:   3'- -CGGC---------UGGCGGCGUC-CACGcuGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 151370 0.7 0.627802
Target:  5'- cGCCGGCCGCUGCGcuGGcggccgaucucuuggGUGGCGGagGCg -3'
miRNA:   3'- -CGGCUGGCGGCGU--CCa--------------CGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 47321 0.7 0.636457
Target:  5'- gGCCGAuCCGCgGCGGGggGCaACGGa-- -3'
miRNA:   3'- -CGGCU-GGCGgCGUCCa-CGcUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 60339 0.7 0.636457
Target:  5'- uGCCGG-CGCCGUAcgcguuGGUGCGcACGGUc- -3'
miRNA:   3'- -CGGCUgGCGGCGU------CCACGC-UGCCAug -5'
15938 5' -60.3 NC_004065.1 + 161409 0.69 0.646071
Target:  5'- cGCCaGCUGCuCGCuguccAGGUGCGACGuGUcgGCg -3'
miRNA:   3'- -CGGcUGGCG-GCG-----UCCACGCUGC-CA--UG- -5'
15938 5' -60.3 NC_004065.1 + 109258 0.69 0.651835
Target:  5'- uGCCaGAUCguaccguggaaggaGCgGCAGGUGCugagcauGACGGUGCg -3'
miRNA:   3'- -CGG-CUGG--------------CGgCGUCCACG-------CUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 56702 0.69 0.654715
Target:  5'- -aCGAcucuucuCCGCCGCAGcGgcgGCGGCGGcgGCa -3'
miRNA:   3'- cgGCU-------GGCGGCGUC-Ca--CGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 74831 0.69 0.655675
Target:  5'- cGCCcgggucggGACCGaggggCGCAGGUugagGCGGCGGUGg -3'
miRNA:   3'- -CGG--------CUGGCg----GCGUCCA----CGCUGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 141624 0.69 0.655675
Target:  5'- uGCCGGCgGUgGCGGcucgGCGACGGaggGCg -3'
miRNA:   3'- -CGGCUGgCGgCGUCca--CGCUGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 77734 0.69 0.655675
Target:  5'- cGCCG-CCGCCGCAGGacuggGCGAgcuccucgaccUGGa-- -3'
miRNA:   3'- -CGGCuGGCGGCGUCCa----CGCU-----------GCCaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.