miRNA display CGI


Results 21 - 40 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15938 5' -60.3 NC_004065.1 + 120194 0.66 0.826577
Target:  5'- gGCCccCCGCCGCAGcaggacgGCGACGaGgGCg -3'
miRNA:   3'- -CGGcuGGCGGCGUCca-----CGCUGC-CaUG- -5'
15938 5' -60.3 NC_004065.1 + 221456 0.66 0.818556
Target:  5'- aCCGG-CGCaaCAGGUGCGcCGGUAUu -3'
miRNA:   3'- cGGCUgGCGgcGUCCACGCuGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 211939 0.66 0.818556
Target:  5'- uGCCGGCCa-CG-AGGcUGCGGCGGUcGCu -3'
miRNA:   3'- -CGGCUGGcgGCgUCC-ACGCUGCCA-UG- -5'
15938 5' -60.3 NC_004065.1 + 22294 0.66 0.818556
Target:  5'- uUCGAUCGUCGguGGgGUGgACGGUGa -3'
miRNA:   3'- cGGCUGGCGGCguCCaCGC-UGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 28740 0.66 0.818556
Target:  5'- cCCGGCCGCCGgAGG-GCcAaaGUACu -3'
miRNA:   3'- cGGCUGGCGGCgUCCaCGcUgcCAUG- -5'
15938 5' -60.3 NC_004065.1 + 24599 0.66 0.818556
Target:  5'- cGCCGccaccGCCGCCGCcGGUGUuGCGa--- -3'
miRNA:   3'- -CGGC-----UGGCGGCGuCCACGcUGCcaug -5'
15938 5' -60.3 NC_004065.1 + 97486 0.66 0.818556
Target:  5'- gGCCcgGAgUGCCGCAGcGaucUGCGGCGGa-- -3'
miRNA:   3'- -CGG--CUgGCGGCGUC-C---ACGCUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 130160 0.66 0.811211
Target:  5'- gGCCGucgcuauccgcgaccCCGgCGCcaucuGGUGCGACGGgGCc -3'
miRNA:   3'- -CGGCu--------------GGCgGCGu----CCACGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 135133 0.66 0.810387
Target:  5'- gGgCGGgCGCgGCGGGUGaugaCGACGGggACg -3'
miRNA:   3'- -CgGCUgGCGgCGUCCAC----GCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 165495 0.66 0.810387
Target:  5'- cGCCGuCgCGCCGCAGcugcUGCG-UGGUGa -3'
miRNA:   3'- -CGGCuG-GCGGCGUCc---ACGCuGCCAUg -5'
15938 5' -60.3 NC_004065.1 + 45537 0.66 0.810387
Target:  5'- cCCGG-CGCCGCGGcG-GCGGCGGc-- -3'
miRNA:   3'- cGGCUgGCGGCGUC-CaCGCUGCCaug -5'
15938 5' -60.3 NC_004065.1 + 105747 0.66 0.810387
Target:  5'- -aCGACUucCCGCAguaccagcGGUGCGACGGcgGCu -3'
miRNA:   3'- cgGCUGGc-GGCGU--------CCACGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 104415 0.66 0.810387
Target:  5'- aGCCgGugCGCCuuuuGUGGG-GCagaGACGGUACg -3'
miRNA:   3'- -CGG-CugGCGG----CGUCCaCG---CUGCCAUG- -5'
15938 5' -60.3 NC_004065.1 + 115197 0.67 0.802075
Target:  5'- uCCGGCCGUgGCcGccGCGACGGgGCa -3'
miRNA:   3'- cGGCUGGCGgCGuCcaCGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 6233 0.67 0.802075
Target:  5'- uGCCGcACCgGCUGgAGGUaguccugucguGCGGCGGggACg -3'
miRNA:   3'- -CGGC-UGG-CGGCgUCCA-----------CGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 139646 0.67 0.802075
Target:  5'- cGCCGGCUccaagcuguGCgGCGcGUGCGGCGGccGCu -3'
miRNA:   3'- -CGGCUGG---------CGgCGUcCACGCUGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 157101 0.67 0.793626
Target:  5'- cCCGACuCGCCGcCGGGgGCGccuucaGCGGggGCa -3'
miRNA:   3'- cGGCUG-GCGGC-GUCCaCGC------UGCCa-UG- -5'
15938 5' -60.3 NC_004065.1 + 184490 0.67 0.793626
Target:  5'- uGCCG-CCGCCGCcgcgGCGcCGGgugGCg -3'
miRNA:   3'- -CGGCuGGCGGCGuccaCGCuGCCa--UG- -5'
15938 5' -60.3 NC_004065.1 + 127643 0.67 0.793626
Target:  5'- cGCUG-CCGCUGCGGcGccgaggGCGGCGGgACc -3'
miRNA:   3'- -CGGCuGGCGGCGUC-Ca-----CGCUGCCaUG- -5'
15938 5' -60.3 NC_004065.1 + 88435 0.67 0.793626
Target:  5'- cGCCG-CCGUCGCGuugGUGGCGGUcGCc -3'
miRNA:   3'- -CGGCuGGCGGCGUccaCGCUGCCA-UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.