Results 41 - 60 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15938 | 5' | -60.3 | NC_004065.1 | + | 88435 | 0.67 | 0.793626 |
Target: 5'- cGCCG-CCGUCGCGuugGUGGCGGUcGCc -3' miRNA: 3'- -CGGCuGGCGGCGUccaCGCUGCCA-UG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 121416 | 0.67 | 0.792774 |
Target: 5'- cGCaGACC-CUGCAGGUacuggagGCGAUGcGUGCg -3' miRNA: 3'- -CGgCUGGcGGCGUCCA-------CGCUGC-CAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 83298 | 0.67 | 0.792774 |
Target: 5'- gGCCGACCGCUGCcucGUGaagaugagauacaCGACGGcuaGCa -3' miRNA: 3'- -CGGCUGGCGGCGuc-CAC-------------GCUGCCa--UG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 130087 | 0.67 | 0.78505 |
Target: 5'- aGCCG-CCGCCGCGGcGguccgGCGucAUGG-ACg -3' miRNA: 3'- -CGGCuGGCGGCGUC-Ca----CGC--UGCCaUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 202484 | 0.67 | 0.78505 |
Target: 5'- uGUCGACCuGCgGCGcGUGCGAgUGGUGg -3' miRNA: 3'- -CGGCUGG-CGgCGUcCACGCU-GCCAUg -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 4084 | 0.67 | 0.775475 |
Target: 5'- -aCGAgcaacacCCGCCGCGGGaGaCGACGGgaaGCg -3' miRNA: 3'- cgGCU-------GGCGGCGUCCaC-GCUGCCa--UG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 159078 | 0.67 | 0.76754 |
Target: 5'- aCCGACCGCCGCGacc-CGGCGuGUAUu -3' miRNA: 3'- cGGCUGGCGGCGUccacGCUGC-CAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 159915 | 0.67 | 0.76754 |
Target: 5'- cGCCG-CCGCCGCcGcUGC--CGGUGCu -3' miRNA: 3'- -CGGCuGGCGGCGuCcACGcuGCCAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 51125 | 0.67 | 0.758621 |
Target: 5'- cGCCGAUUGCUGCGGcacGUaGCGGCGcgacuuccaGUACa -3' miRNA: 3'- -CGGCUGGCGGCGUC---CA-CGCUGC---------CAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 114447 | 0.67 | 0.758621 |
Target: 5'- cGCCGccaccaccACCGCCGUcucaccaucgcGGcgGUGGCGGUACu -3' miRNA: 3'- -CGGC--------UGGCGGCGu----------CCa-CGCUGCCAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 99124 | 0.67 | 0.757724 |
Target: 5'- uUUGACgGCaaCGCAGGUGCGgccgacgGCGGUAa -3' miRNA: 3'- cGGCUGgCG--GCGUCCACGC-------UGCCAUg -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 116320 | 0.68 | 0.749604 |
Target: 5'- cGUCGGCgGCgGCAGcG-GCGACGGc-- -3' miRNA: 3'- -CGGCUGgCGgCGUC-CaCGCUGCCaug -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 125875 | 0.68 | 0.749604 |
Target: 5'- aCCGAcaCCGCCGCGGaagGCGACGa--- -3' miRNA: 3'- cGGCU--GGCGGCGUCca-CGCUGCcaug -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 98164 | 0.68 | 0.749604 |
Target: 5'- cGCCGccACCGCCGCcuAGGcucaGCG-UGGUAUu -3' miRNA: 3'- -CGGC--UGGCGGCG--UCCa---CGCuGCCAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 65656 | 0.68 | 0.749604 |
Target: 5'- uGCCGcuGCCGCCGCAGGaagaucCGACGc--- -3' miRNA: 3'- -CGGC--UGGCGGCGUCCac----GCUGCcaug -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 154141 | 0.68 | 0.740495 |
Target: 5'- -aCGAUCGCCcCGGGcggugGCGGCGGcgGCg -3' miRNA: 3'- cgGCUGGCGGcGUCCa----CGCUGCCa-UG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 170315 | 0.68 | 0.740495 |
Target: 5'- cGCCGugCGCCGCGGccGCu-CGGcGCc -3' miRNA: 3'- -CGGCugGCGGCGUCcaCGcuGCCaUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 209572 | 0.68 | 0.740495 |
Target: 5'- gGCCGGCUGCUgGCGGGcGUG-CGGUc- -3' miRNA: 3'- -CGGCUGGCGG-CGUCCaCGCuGCCAug -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 96574 | 0.68 | 0.740495 |
Target: 5'- cGCCGACgaGCCGCGacGcGUgGCGACGcUGCa -3' miRNA: 3'- -CGGCUGg-CGGCGU--C-CA-CGCUGCcAUG- -5' |
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15938 | 5' | -60.3 | NC_004065.1 | + | 173032 | 0.68 | 0.731304 |
Target: 5'- cGuuGGCUGuuaCCGCuAGGUgGCGACGGaACa -3' miRNA: 3'- -CggCUGGC---GGCG-UCCA-CGCUGCCaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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